# HG changeset patch
# User davidvanzessen
# Date 1485509383 18000
# Node ID e2fbdfacec1df08262489f62061e12207a6ed0c0
# Parent  c28da767799f78a07f53ce60bf37c9e7f6ffa723
Uploaded

diff -r c28da767799f -r e2fbdfacec1d report_clonality/r_wrapper.sh
--- a/report_clonality/r_wrapper.sh	Fri Jan 27 04:24:41 2017 -0500
+++ b/report_clonality/r_wrapper.sh	Fri Jan 27 04:29:43 2017 -0500
@@ -262,7 +262,7 @@
 			echo "<div class='tabbertab' title='$sample'>" >> $outputFile
 			echo "Lymphclon clonality score: <br />$clonalityScore<br /><br />" >> $outputFile
 			echo "<table border = 1>" >> $outputFile
-			while IFS=, read type count
+			while read type count
 			do
 				echo "<tr><td>$type</td><td>$count</td></tr>" >> $outputFile
 			done < $outputDir/lymphclon_coincidences_$sample.txt