Mercurial > repos > davidvanzessen > argalaxy_tools
changeset 22:c28da767799f draft
Uploaded
author | davidvanzessen |
---|---|
date | Fri, 27 Jan 2017 04:24:41 -0500 (2017-01-27) |
parents | 9c843eb06416 |
children | e2fbdfacec1d |
files | report_clonality/r_wrapper.sh |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/report_clonality/r_wrapper.sh Fri Jan 27 03:58:45 2017 -0500 +++ b/report_clonality/r_wrapper.sh Fri Jan 27 04:24:41 2017 -0500 @@ -258,14 +258,14 @@ echo "</table></div>" >> $outputFile else echo "in new" - clonalityScore="$(cat $outputDir/lymphclon_clonality_${sample}.csv)" + clonalityScore="$(cat $outputDir/lymphclon_clonality_${sample}.txt)" echo "<div class='tabbertab' title='$sample'>" >> $outputFile echo "Lymphclon clonality score: <br />$clonalityScore<br /><br />" >> $outputFile echo "<table border = 1>" >> $outputFile while IFS=, read type count do echo "<tr><td>$type</td><td>$count</td></tr>" >> $outputFile - done < $outputDir/lymphclon_coincidences_$sample.csv + done < $outputDir/lymphclon_coincidences_$sample.txt echo "</table></div>" >> $outputFile fi done