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1 <tool id="change_o_makdedb_galaxy" name="MakeDB" version="1.0">
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2 <description>Change-O</description>
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3 <command interpreter="bash">
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4 makedb.sh $input $noparse $scores $regions $out_file
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5 </command>
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6 <inputs>
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7 <param name="input" type="data" label="Input IMGT zip file" />
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8 <param name="noparse" type="select" label="No parse" help="Specify if input IDs should not be parsed to add new columns to database." >
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9 <option value="true">True</option>
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10 <option value="false" selected="true">False</option>
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11 </param>
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12 <param name="scores" type="select" label="Scores" help="Specify if alignment score metrics should be included in the output." >
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13 <option value="true">True</option>
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14 <option value="false" selected="true">False</option>
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15 </param>
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16 <param name="regions" type="select" label="Regions" help="Specify if IMGT framework and CDR regions should be included in the output." >
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17 <option value="true">True</option>
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18 <option value="false" selected="true">False</option>
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19 </param>
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20 </inputs>
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21 <outputs>
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22 <data format="tabular" name="out_file" label = "Change-o DB ${input.name}"/>
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23 </outputs>
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24 <citations>
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25 <citation type="doi">10.1093/bioinformatics/btv359</citation>
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26 </citations>
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27 <help>
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28
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29
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30 </help>
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31 </tool>
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