comparison makedb.xml @ 0:183edf446dcf draft default tip

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0:183edf446dcf

<tool id="change_o_makdedb_galaxy" name="MakeDB" version="1.0">
	<description>Change-O</description>
	<command interpreter="bash">
		makedb.sh $input $noparse $scores $regions $out_file
	</command>
	<inputs>
		<param name="input" type="data" label="Input IMGT zip file" />
		<param name="noparse" type="select" label="No parse" help="Specify if input IDs should not be parsed to add new columns to database." >
			<option value="true">True</option>
			<option value="false" selected="true">False</option>
		</param>
		<param name="scores" type="select" label="Scores" help="Specify if alignment score metrics should be included in the output." >
			<option value="true">True</option>
			<option value="false" selected="true">False</option>
		</param>
		<param name="regions" type="select" label="Regions" help="Specify if IMGT framework and CDR regions should be included in the output." >
			<option value="true">True</option>
			<option value="false" selected="true">False</option>
		</param>
	</inputs>
	<outputs>
		<data format="tabular" name="out_file" label = "Change-o DB ${input.name}"/>
	</outputs>
	<citations>
		<citation type="doi">10.1093/bioinformatics/btv359</citation>
	</citations>
	<help>
			
	
	</help>
</tool>