diff create_germlines.xml @ 0:183edf446dcf draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/create_germlines.xml	Mon Jul 17 07:44:27 2017 -0400
@@ -0,0 +1,28 @@
+<tool id="change_o_create_germlines_galaxy" name="Create Germlines" version="1.0">
+	<description>Change-O</description>
+	<command interpreter="bash">
+		create_germlines.sh $input $type $cloned $out_file
+	</command>
+	<inputs>
+		<param name="input" type="data" label="Input IMGT zip file" />
+		<param name="type" type="select" label="Type" help="Specify type(s) of germlines to include full germline, germline with D-region masked, or germline for V-region only." >
+			<option value="full" selected="true">Full germline</option>
+			<option value="dmask">Masked D-region</option>
+			<option value="vonly" >V-region only</option>
+		</param>
+		<param name="cloned" type="select" label="Cloned" help="Create one germline per clone" >
+			<option value="true">True</option>
+			<option value="false" selected="true">False</option>
+		</param>
+	</inputs>
+	<outputs>
+		<data format="tabular" name="out_file" label = "Change-O Germline on ${on_string}"/>
+	</outputs>
+	<citations>
+		<citation type="doi">10.1093/bioinformatics/btv359</citation>
+	</citations>
+	<help>
+			
+	
+	</help>
+</tool>