view create_germlines.xml @ 0:183edf446dcf draft default tip

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<tool id="change_o_create_germlines_galaxy" name="Create Germlines" version="1.0">
	<description>Change-O</description>
	<command interpreter="bash">
		create_germlines.sh $input $type $cloned $out_file
	</command>
	<inputs>
		<param name="input" type="data" label="Input IMGT zip file" />
		<param name="type" type="select" label="Type" help="Specify type(s) of germlines to include full germline, germline with D-region masked, or germline for V-region only." >
			<option value="full" selected="true">Full germline</option>
			<option value="dmask">Masked D-region</option>
			<option value="vonly" >V-region only</option>
		</param>
		<param name="cloned" type="select" label="Cloned" help="Create one germline per clone" >
			<option value="true">True</option>
			<option value="false" selected="true">False</option>
		</param>
	</inputs>
	<outputs>
		<data format="tabular" name="out_file" label = "Change-O Germline on ${on_string}"/>
	</outputs>
	<citations>
		<citation type="doi">10.1093/bioinformatics/btv359</citation>
	</citations>
	<help>
			
	
	</help>
</tool>