annotate imgt_concatenate.xml @ 0:d3cf09f5a1a6 draft

Uploaded
author davidvanzessen
date Mon, 29 Aug 2016 05:46:28 -0400
parents
children b360a373835f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
1 <tool id="imgt_concatenate" name="IMGT Concatenate" version="1.0">
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
2 <description> </description>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
3 <command interpreter="bash">
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
4 imgt_concatenate.sh $out_file
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
5 #for $i, $f in enumerate($files)
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
6 "$f.file"
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
7 #end for
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
8 </command>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
9 <inputs>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
10 <repeat name="files" title="Sample" min="2" default="2">
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
11 <param name="file" format="peptideshaker_archive" type="data" label="IMGT zip file" />
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
12 </repeat>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
13 <param name="label" type="text" label="A name for the new dataset" size="25">
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
14 <validator type="length" message="Fill in a name for the new dataset" min="1" />
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
15 </param>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
16 </inputs>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
17 <outputs>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
18 <data format="peptideshaker_archive" name="out_file" label="${label}"/>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
19 </outputs>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
20 <help>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
21 Concatenate two or more IMGT files to create one new IMGT zip with all the sequences of the inputs.
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
22
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
23 </help>
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
24
d3cf09f5a1a6 Uploaded
davidvanzessen
parents:
diff changeset
25 </tool>