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author davidvanzessen
date Tue, 05 Mar 2019 05:27:37 -0500
parents 4bb8f6523130
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<tool id="imgt_locus_split" name="IMGT Locus Split" version="0.1">
    <requirements>
        <requirement type="package" version="3.7.1">python</requirement>
        <requirement type="package" version="0.4.15">python-magic</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        python3 $__tool_directory__/imgt_locus_split.py 
            --input $input
            --loci $loci
            --output $output
    ]]></command>
    <inputs>
        <param name="input" type="data" format="data" label="The IMGT zip file to be split"/>
        <param name="loci" type="select" label="Loci" multiple="true" display="checkboxes">
            <option value="IG" selected="true">IG</option>
            <option value="IGH">IGH</option>
            <option value="IGK">IGK</option>
            <option value="IGL">IGL</option>
            <option value="TR" selected="true">TR</option>
            <option value="TRA">TRA</option>
            <option value="TRB">TRB</option>
            <option value="TRD">TRD</option>
            <option value="TRG">TRG</option>
        </param>
    </inputs>
    <outputs>
        <data format="imgt_archive" name="output" label="${input.name} $loci" />
    </outputs>
    <help><![CDATA[
        Creates a new IMGT zip file for every checked locus with sequences from only that locus.
    ]]></help>
    <citations>
        <citation type="doi">10.1093/nar/gku1056</citation>
    </citations>
</tool>