Mercurial > repos > davidvanzessen > mutation_analysis
comparison tool_dependencies.xml @ 0:8a5a2abbb870 draft default tip
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| author | davidvanzessen |
|---|---|
| date | Mon, 29 Aug 2016 05:36:10 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:8a5a2abbb870 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <set_environment version="1.0"> | |
| 4 </set_environment> | |
| 5 | |
| 6 <package name="blastn" version="1.0"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action> | |
| 10 <action type="move_file"> | |
| 11 <source>bin/blastn</source> | |
| 12 <destination>$INSTALL_DIR</destination> | |
| 13 </action> | |
| 14 <action type="set_environment"> | |
| 15 <environment_variable name="BLASTN_DIR" action="set_to">$INSTALL_DIR</environment_variable> | |
| 16 </action> | |
| 17 </actions> | |
| 18 </install> | |
| 19 <readme> | |
| 20 downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable | |
| 21 </readme> | |
| 22 </package> | |
| 23 </tool_dependency> | |
| 24 |
