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comparison ALL.xml @ 1:75853bceec00 draft

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author davidvanzessen
date Tue, 17 Jan 2017 07:24:44 -0500
parents ed6885c85660
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0:ed6885c85660 1:75853bceec00
6 <inputs> 6 <inputs>
7 <param name="in_file" format="tabular" type="data" label="Data to Process" /> 7 <param name="in_file" format="tabular" type="data" label="Data to Process" />
8 <param name="min_freq" type="text" label="Minimum Frequency, between 0 and 100 in percentage" value='0'/> 8 <param name="min_freq" type="text" label="Minimum Frequency, between 0 and 100 in percentage" value='0'/>
9 <param name="min_cells" type="text" label="Minimum cell count" value='0'/> 9 <param name="min_cells" type="text" label="Minimum cell count" value='0'/>
10 <param name="merge_on" type="select" label="Merge On"> 10 <param name="merge_on" type="select" label="Merge On">
11 <option value="Clone_Sequence">Clone_Sequence</option> 11 <option value="Clone_Sequence">Clone_Sequence</option>
12 <option value="V_J_CDR3">V+J+CDR3</option> 12 <option value="V_J_CDR3">V+J+CDR3</option>
13 </param> 13 </param>
14 </inputs> 14 </inputs>
15 <outputs> 15 <outputs>
16 <data format="html" name="out_file" /> 16 <data format="html" name="out_file" />
17 </outputs> 17 </outputs>
38 | Clone_Sequence | The entire sequence | 38 | Clone_Sequence | The entire sequence |
39 +----------------------------------+----------------------------------------------+ 39 +----------------------------------+----------------------------------------------+
40 | CDR3_Sense_Sequence | The CDR3 sequence region. | 40 | CDR3_Sense_Sequence | The CDR3 sequence region. |
41 +----------------------------------+----------------------------------------------+ 41 +----------------------------------+----------------------------------------------+
42 42
43 It will handle patients with one, two or three samples.
43 44
44 And generate a detailed HTML report on the sequences found in indiviual samples and in both samples. 45 And generate a detailed HTML report on the sequences found in indiviual samples and in both samples.
45 </help> 46 </help>
46 </tool> 47 </tool>