Mercurial > repos > davidvanzessen > sff_extract_demultiplex
comparison results_footer.html @ 2:44ec2a1009fc draft
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author | davidvanzessen |
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date | Wed, 21 Dec 2016 10:23:19 -0500 |
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33 | |
34 <div class=WordSection1> | |
35 | |
36 <p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><span lang=EN-GB | |
37 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Table showing | |
38 the number of sequences identified for each samples and the number of sequences | |
39 in which no MID tag could be matched. In addition, multiple files can be | |
40 downloaded for each sample.</span></p> | |
41 | |
42 <p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><u><span lang=EN-GB | |
43 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>FASTQ:</span></u><span | |
44 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'> | |
45 Downloads a FASTQ file with all the sequences that are linked to the sample. | |
46 Sequences have not been trimmed. </span></p> | |
47 | |
48 <p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><u><span lang=EN-GB | |
49 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>FASTA:</span></u><span | |
50 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'> | |
51 Downloads a FASTA file with all the sequences that are linked to the sample. | |
52 Sequences have not been trimmed. </span></p> | |
53 | |
54 <p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><u><span lang=EN-GB | |
55 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Trimmed FASTA:</span></u><span | |
56 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'> | |
57 Downloads a trimmed FASTA file with all the sequences that are linked to the | |
58 sample. Sequences are trimmed according to the settings entered at the barcodes | |
59 section of the main page of the demultiplex tool. </span></p> | |
60 | |
61 <p class=MsoNoSpacingCxSpLast style='text-align:justify'><u><span lang=EN-GB | |
62 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>FASTQC:</span></u><span | |
63 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'> The | |
64 sequences of each individual sample automatically is analysed using FASTQC. | |
65 Clicking “Report” opens a new page containing all quality control results of | |
66 the analysis of FASTQC. </span><span style='font-size:12.0pt;font-family:"Times New Roman","serif"; | |
67 color:black'>(</span><span lang=EN-GB><a | |
68 href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" target="_blank"><span | |
69 lang=EN-US style='font-size:12.0pt;font-family:"Times New Roman","serif"; | |
70 color:#303030;text-decoration:none'>http://www.bioinformatics.babraham.ac.uk/projects/fastqc/</span></a></span><span | |
71 style='font-size:12.0pt;font-family:"Times New Roman","serif";color:black'>)</span></p> | |
72 | |
73 <p class=MsoNormal> </p> | |
74 | |
75 </div> |