Mercurial > repos > davidvanzessen > sff_extract_demultiplex
diff results_footer.html @ 2:44ec2a1009fc draft
Uploaded
author | davidvanzessen |
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date | Wed, 21 Dec 2016 10:23:19 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/results_footer.html Wed Dec 21 10:23:19 2016 -0500 @@ -0,0 +1,75 @@ +<style> +<!-- + /* Font Definitions */ + @font-face + {font-family:Calibri; + panose-1:2 15 5 2 2 2 4 3 2 4;} + /* Style Definitions */ + p.MsoNormal, li.MsoNormal, div.MsoNormal + {margin-top:0in; + margin-right:0in; + margin-bottom:10.0pt; + margin-left:0in; + line-height:115%; + font-size:11.0pt; + font-family:"Calibri","sans-serif";} +p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing + {margin:0in; + margin-bottom:.0001pt; + font-size:11.0pt; + font-family:"Calibri","sans-serif";} +.MsoChpDefault + {font-family:"Calibri","sans-serif";} +.MsoPapDefault + {margin-bottom:10.0pt; + line-height:115%;} +@page WordSection1 + {size:8.5in 11.0in; + margin:1.0in 1.0in 1.0in 1.0in;} +div.WordSection1 + {page:WordSection1;} +--> +</style> + +<div class=WordSection1> + +<p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><span lang=EN-GB +style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Table showing +the number of sequences identified for each samples and the number of sequences +in which no MID tag could be matched. In addition, multiple files can be +downloaded for each sample.</span></p> + +<p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><u><span lang=EN-GB +style='font-size:12.0pt;font-family:"Times New Roman","serif"'>FASTQ:</span></u><span +lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'> +Downloads a FASTQ file with all the sequences that are linked to the sample. +Sequences have not been trimmed. </span></p> + +<p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><u><span lang=EN-GB +style='font-size:12.0pt;font-family:"Times New Roman","serif"'>FASTA:</span></u><span +lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'> +Downloads a FASTA file with all the sequences that are linked to the sample. +Sequences have not been trimmed. </span></p> + +<p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><u><span lang=EN-GB +style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Trimmed FASTA:</span></u><span +lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'> +Downloads a trimmed FASTA file with all the sequences that are linked to the +sample. Sequences are trimmed according to the settings entered at the barcodes +section of the main page of the demultiplex tool. </span></p> + +<p class=MsoNoSpacingCxSpLast style='text-align:justify'><u><span lang=EN-GB +style='font-size:12.0pt;font-family:"Times New Roman","serif"'>FASTQC:</span></u><span +lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'> The +sequences of each individual sample automatically is analysed using FASTQC. +Clicking “Report” opens a new page containing all quality control results of +the analysis of FASTQC. </span><span style='font-size:12.0pt;font-family:"Times New Roman","serif"; +color:black'>(</span><span lang=EN-GB><a +href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" target="_blank"><span +lang=EN-US style='font-size:12.0pt;font-family:"Times New Roman","serif"; +color:#303030;text-decoration:none'>http://www.bioinformatics.babraham.ac.uk/projects/fastqc/</span></a></span><span +style='font-size:12.0pt;font-family:"Times New Roman","serif";color:black'>)</span></p> + +<p class=MsoNormal> </p> + +</div>