diff wrapper.sh @ 2:44ec2a1009fc draft

Uploaded

--- a/wrapper.sh	Wed Dec 21 10:07:42 2016 -0500
+++ b/wrapper.sh	Wed Dec 21 10:23:19 2016 -0500
@@ -64,4 +64,7 @@
 		python $dir/trim.py --input "$file.fasta" --output "${file}_trimmed.fasta" --start "${trim_start[$barcode]}" --end "${trim_end[$barcode]}"
 		echo "<tr><td>$barcode</td><td>$count</td><td><a href='$file.fastq'>$file.fastq</a></td><td><a href='$file.fasta'>$file.fasta</a></td><td><a href='${file}_trimmed.fasta'>${file}_trimmed.fasta</a></td><td><a href='${name}_${barcode}_fastqc.html'>Report</a></td></tr>" >> $output
 done < output.txt
-echo "</tbody></body></html>" >> $output
+
+echo "</tbody></table>" >> $output
+cat $dir/results_footer.html >> $output
+echo "</body></html>" >> $output