Mercurial > repos > davidvanzessen > shm_csr
annotate change_o/define_clones.r @ 12:6b66c1c57f22 draft
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| author | davidvanzessen |
|---|---|
| date | Thu, 10 Nov 2016 08:36:18 -0500 |
| parents | c33d93683a09 |
| children |
| rev | line source |
|---|---|
| 0 | 1 args <- commandArgs(trailingOnly = TRUE) |
| 2 | |
| 3 input=args[1] | |
| 4 output=args[2] | |
| 5 | |
| 6 change.o = read.table(input, header=T, sep="\t", quote="", stringsAsFactors=F) | |
| 7 | |
| 8 freq = data.frame(table(change.o$CLONE)) | |
| 9 freq2 = data.frame(table(freq$Freq)) | |
| 10 | |
| 11 freq2$final = as.numeric(freq2$Freq) * as.numeric(as.character(freq2$Var1)) | |
| 12 | |
| 13 names(freq2) = c("Clone size", "Nr of clones", "Nr of sequences") | |
| 14 | |
| 15 write.table(x=freq2, file=output, sep="\t",quote=F,row.names=F,col.names=T) |