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annotate README.md @ 92:cf8ad181628f draft

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planemo upload commit 36be3b053802693392f935e6619ba3f2b1704e3c
author rhpvorderman
date Mon, 12 Dec 2022 12:32:44 +0000
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1 # SHM CSR
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3 Somatic hypermutation and class switch recombination pipeline.
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4 The docker version can be found [here](https://github.com/ErasmusMC-Bioinformatics/ARGalaxy-docker).
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6 # Dependencies
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7 --------------------
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8 [Python 3.7](https://www.python.org/)
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9 [Change-O](https://changeo.readthedocs.io/en/version-0.4.4/)
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10 [Baseline](http://selection.med.yale.edu/baseline/)
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11 [R data.table](https://cran.r-project.org/web/packages/data.table/data.table.pdf)
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12 [R ggplot2](https://cran.r-project.org/web/packages/ggplot2/ggplot2.pdf)
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13 [R reshape2](https://cran.r-project.org/web/packages/reshape/reshape.pdf)