Mercurial > repos > davidvanzessen > shm_csr

comparison nt_overview.r @ 96:385dea3c6cb5 draft

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planemo upload commit 423a48569c69301fdbf893ac3a649128404dfff5
author rhpvorderman
date Fri, 05 Jan 2024 08:53:22 +0000
parents cf8ad181628f
children
comparison
equal deleted inserted replaced
95:d63eff357515 96:385dea3c6cb5
15 15
16 #ACGT overview 16 #ACGT overview
17 17
18 NToverview = merged 18 NToverview = merged
19 19
20 if(empty.region.filter == "leader"){ 20 if(empty.region.filter == "leader" || empty.region.filter == "None"){
21 NToverview$seq = paste(NToverview$FR1.IMGT.seq, NToverview$CDR1.IMGT.seq, NToverview$FR2.IMGT.seq, NToverview$CDR2.IMGT.seq, NToverview$FR3.IMGT.seq) 21 NToverview$seq = paste(NToverview$FR1.IMGT.seq, NToverview$CDR1.IMGT.seq, NToverview$FR2.IMGT.seq, NToverview$CDR2.IMGT.seq, NToverview$FR3.IMGT.seq)
22 } else if(empty.region.filter == "FR1"){ 22 } else if(empty.region.filter == "FR1"){
23 NToverview$seq = paste(NToverview$CDR1.IMGT.seq, NToverview$FR2.IMGT.seq, NToverview$CDR2.IMGT.seq, NToverview$FR3.IMGT.seq) 23 NToverview$seq = paste(NToverview$CDR1.IMGT.seq, NToverview$FR2.IMGT.seq, NToverview$CDR2.IMGT.seq, NToverview$FR3.IMGT.seq)
24 } else if(empty.region.filter == "CDR1"){ 24 } else if(empty.region.filter == "CDR1"){
25 NToverview$seq = paste(NToverview$FR2.IMGT.seq, NToverview$CDR2.IMGT.seq, NToverview$FR3.IMGT.seq) 25 NToverview$seq = paste(NToverview$FR2.IMGT.seq, NToverview$CDR2.IMGT.seq, NToverview$FR3.IMGT.seq)