Mercurial > repos > davidvanzessen > shm_csr

diff shm_transition.htm @ 83:729738462297 draft

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"planemo upload commit c0ffc68aec5836d5b20b543106493056a87edf57"
author rhpvorderman
date Wed, 15 Sep 2021 12:24:06 +0000
parents ba33b94637ca
children 6809c63d9161
line wrap: on
line diff
--- a/shm_transition.htm	Thu Feb 25 10:32:32 2021 +0000
+++ b/shm_transition.htm	Wed Sep 15 12:24:06 2021 +0000
@@ -1,120 +1,120 @@
-<html>
-
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
-<meta name=Generator content="Microsoft Word 14 (filtered)">
-<style>
-<!--
- /* Font Definitions */
- @font-face
-	{font-family:Calibri;
-	panose-1:2 15 5 2 2 2 4 3 2 4;}
- /* Style Definitions */
- p.MsoNormal, li.MsoNormal, div.MsoNormal
-	{margin-top:0in;
-	margin-right:0in;
-	margin-bottom:10.0pt;
-	margin-left:0in;
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-	font-size:11.0pt;
-	font-family:"Calibri","sans-serif";}
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-a:visited, span.MsoHyperlinkFollowed
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-	margin-right:0in;
-	margin-bottom:10.0pt;
-	margin-left:0in;
-	line-height:115%;
-	font-size:12.0pt;
-	font-family:"Times New Roman","serif";}
-span.apple-converted-space
-	{mso-style-name:apple-converted-space;}
-.MsoChpDefault
-	{font-size:10.0pt;
-	font-family:"Calibri","sans-serif";}
-.MsoPapDefault
-	{margin-bottom:10.0pt;
-	line-height:115%;}
-@page WordSection1
-	{size:8.5in 11.0in;
-	margin:1.0in 1.0in 1.0in 1.0in;}
-div.WordSection1
-	{page:WordSection1;}
--->
-</style>
-
-</head>
-
-<body lang=EN-US link=blue vlink=purple>
-
-<div class=WordSection1>
-
-<p class=MsoNormalCxSpFirst style='text-align:justify'><span style='font-size:
-12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>These graphs and
-tables give insight into the targeting and patterns of SHM. This can give
-insight into the DNA repair pathways used to solve the U:G mismatches
-introduced by AID. More information on the values found in healthy individuals
-of different ages can be found in IJspeert and van Schouwenburg et al, PMID:
-27799928.</span></p>
-
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><b><span
-style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Graphs
-</span></b></p>
-
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><a name="OLE_LINK93"></a><a
-name="OLE_LINK92"></a><a name="OLE_LINK91"><u><span style='font-size:12.0pt;
-line-height:115%;font-family:"Times New Roman","serif"'>Heatmap transition
-information</span></u></a></p>
-
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><a name="OLE_LINK98"></a><a
-name="OLE_LINK97"><span style='font-size:12.0pt;line-height:115%;font-family:
-"Times New Roman","serif"'>Heatmaps visualizing for each subclass the frequency
-of all possible substitutions. On the x-axes the original base is shown, while
-the y-axes shows the new base. The darker the shade of blue, the more frequent
-this type of substitution is occurring.  </span></a></p>
-
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><u><span
-style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Bargraph
-transition information</span></u></p>
-
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><span style='font-size:
-12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Bar graph
-visualizing for each original base the distribution of substitutions into the other
-bases. A graph is included for each (sub)class. </span></p>
-
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><b><span
-style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Tables</span></b></p>
-
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><span style='font-size:
-12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Transition
-tables are shown for each (sub)class. All the original bases are listed
-horizontally, while the new bases are listed vertically. </span></p>
-
-<p class=MsoNormal><span lang=NL style='font-size:12.0pt;line-height:115%;
-font-family:"Times New Roman","serif"'>Hanna IJspeert, Pauline A. van
-Schouwenburg, David van Zessen, Ingrid Pico-Knijnenburg, Gertjan J. Driessen,
-Andrew P. Stubbs, and Mirjam van der Burg (2016). </span><span
-style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Evaluation
-of the Antigen-Experienced B-Cell Receptor Repertoire in Healthy Children and
-Adults. In <i>Frontiers in Immunolog, 7, pp. e410-410. </i>[<a
-href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066086/"><span
-style='color:windowtext'>doi:10.3389/fimmu.2016.00410</span></a>][<a
-href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066086/"><span
-style='color:windowtext'>Link</span></a>]</span></p>
-
-</div>
-
-</body>
-
-</html>
+<html>
+
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
+<meta name=Generator content="Microsoft Word 14 (filtered)">
+<style>
+<!--
+ /* Font Definitions */
+ @font-face
+	{font-family:Calibri;
+	panose-1:2 15 5 2 2 2 4 3 2 4;}
+ /* Style Definitions */
+ p.MsoNormal, li.MsoNormal, div.MsoNormal
+	{margin-top:0in;
+	margin-right:0in;
+	margin-bottom:10.0pt;
+	margin-left:0in;
+	line-height:115%;
+	font-size:11.0pt;
+	font-family:"Calibri","sans-serif";}
+a:link, span.MsoHyperlink
+	{color:blue;
+	text-decoration:underline;}
+a:visited, span.MsoHyperlinkFollowed
+	{color:purple;
+	text-decoration:underline;}
+p.msochpdefault, li.msochpdefault, div.msochpdefault
+	{mso-style-name:msochpdefault;
+	margin-right:0in;
+	margin-left:0in;
+	font-size:12.0pt;
+	font-family:"Calibri","sans-serif";}
+p.msopapdefault, li.msopapdefault, div.msopapdefault
+	{mso-style-name:msopapdefault;
+	margin-right:0in;
+	margin-bottom:10.0pt;
+	margin-left:0in;
+	line-height:115%;
+	font-size:12.0pt;
+	font-family:"Times New Roman","serif";}
+span.apple-converted-space
+	{mso-style-name:apple-converted-space;}
+.MsoChpDefault
+	{font-size:10.0pt;
+	font-family:"Calibri","sans-serif";}
+.MsoPapDefault
+	{margin-bottom:10.0pt;
+	line-height:115%;}
+@page WordSection1
+	{size:8.5in 11.0in;
+	margin:1.0in 1.0in 1.0in 1.0in;}
+div.WordSection1
+	{page:WordSection1;}
+-->
+</style>
+
+</head>
+
+<body lang=EN-US link=blue vlink=purple>
+
+<div class=WordSection1>
+
+<p class=MsoNormalCxSpFirst style='text-align:justify'><span style='font-size:
+12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>These graphs and
+tables give insight into the targeting and patterns of SHM. This can give
+insight into the DNA repair pathways used to solve the U:G mismatches
+introduced by AID. More information on the values found in healthy individuals
+of different ages can be found in IJspeert and van Schouwenburg et al, PMID:
+27799928.</span></p>
+
+<p class=MsoNormalCxSpMiddle style='text-align:justify'><b><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Graphs
+</span></b></p>
+
+<p class=MsoNormalCxSpMiddle style='text-align:justify'><a name="OLE_LINK93"></a><a
+name="OLE_LINK92"></a><a name="OLE_LINK91"><u><span style='font-size:12.0pt;
+line-height:115%;font-family:"Times New Roman","serif"'>Heatmap transition
+information</span></u></a></p>
+
+<p class=MsoNormalCxSpMiddle style='text-align:justify'><a name="OLE_LINK98"></a><a
+name="OLE_LINK97"><span style='font-size:12.0pt;line-height:115%;font-family:
+"Times New Roman","serif"'>Heatmaps visualizing for each subclass the frequency
+of all possible substitutions. On the x-axes the original base is shown, while
+the y-axes shows the new base. The darker the shade of blue, the more frequent
+this type of substitution is occurring.  </span></a></p>
+
+<p class=MsoNormalCxSpMiddle style='text-align:justify'><u><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Bargraph
+transition information</span></u></p>
+
+<p class=MsoNormalCxSpMiddle style='text-align:justify'><span style='font-size:
+12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Bar graph
+visualizing for each original base the distribution of substitutions into the other
+bases. A graph is included for each (sub)class. </span></p>
+
+<p class=MsoNormalCxSpMiddle style='text-align:justify'><b><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Tables</span></b></p>
+
+<p class=MsoNormalCxSpMiddle style='text-align:justify'><span style='font-size:
+12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Transition
+tables are shown for each (sub)class. All the original bases are listed
+horizontally, while the new bases are listed vertically. </span></p>
+
+<p class=MsoNormal><span lang=NL style='font-size:12.0pt;line-height:115%;
+font-family:"Times New Roman","serif"'>Hanna IJspeert, Pauline A. van
+Schouwenburg, David van Zessen, Ingrid Pico-Knijnenburg, Gertjan J. Driessen,
+Andrew P. Stubbs, and Mirjam van der Burg (2016). </span><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Evaluation
+of the Antigen-Experienced B-Cell Receptor Repertoire in Healthy Children and
+Adults. In <i>Frontiers in Immunolog, 7, pp. e410-410. </i>[<a
+href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066086/"><span
+style='color:windowtext'>doi:10.3389/fimmu.2016.00410</span></a>][<a
+href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066086/"><span
+style='color:windowtext'>Link</span></a>]</span></p>
+
+</div>
+
+</body>
+
+</html>