Mercurial > repos > davidvanzessen > shm_csr

diff shm_csr.xml @ 18:949a30f04d9b draft

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Uploaded
author davidvanzessen
date Mon, 28 Nov 2016 04:41:22 -0500
parents 61d0a6318711
children fff3c83ec9b8
line wrap: on
line diff
--- a/shm_csr.xml	Thu Nov 24 10:24:19 2016 -0500
+++ b/shm_csr.xml	Mon Nov 28 04:41:22 2016 -0500
@@ -33,13 +33,15 @@
 			<option value="CDR3.IMGT.seq">CDR3 (nt)</option>
 			<option value="Sequence.ID" selected="true">Don't remove duplicates</option>
 		</param>
-		<param name="class_filter" type="select" label="Human Class/Subclass filter" help="" >
-			<option value="70_70" selected="true">>70% class and >70% subclass</option>
-			<option value="60_55">>60% class and >55% subclass</option>
-			<option value="70_0">>70% class</option>
-			<option value="60_0">>60% class</option>
-			<option value="101_101">Do not assign (sub)class</option>
-		</param>
+		<conditional name="class_filter_cond">
+			<param name="class_filter" type="select" label="Human Class/Subclass filter" help="" >
+				<option value="70_70" selected="true">>70% class and >70% subclass</option>
+				<option value="60_55">>60% class and >55% subclass</option>
+				<option value="70_0">>70% class</option>
+				<option value="60_0">>60% class</option>
+				<option value="101_101">Do not assign (sub)class</option>
+			</param>
+		</conditional>
 		<conditional name="naive_output_cond">
 			<param name="naive_output" type="select" label="Output new IMGT archives per class into your history?">
 				<option value="yes">Yes</option>
@@ -59,15 +61,23 @@
 		<data format="html" name="out_file" label = "SHM &amp; CSR on ${in_file.name}"/>
 		<data format="imgt_archive" name="naive_output_ca" label = "Naive CA input data from ${in_file.name}" >
 		    <filter>naive_output_cond['naive_output'] == "yes"</filter>
+		    <filter>class_filter_cond['class_filter'] != "101_101"</filter>
 		</data>
 		<data format="imgt_archive" name="naive_output_cg" label = "Naive CG input data from ${in_file.name}" >
 		    <filter>naive_output_cond['naive_output'] == "yes"</filter>
+		    <filter>class_filter_cond['class_filter'] != "101_101"</filter>
 		</data>
 		<data format="imgt_archive" name="naive_output_cm" label = "Naive CM input data from ${in_file.name}" >
 		    <filter>naive_output_cond['naive_output'] == "yes"</filter>
+		    <filter>class_filter_cond['class_filter'] != "101_101"</filter>
 		</data>
 		<data format="imgt_archive" name="naive_output_ce" label = "Naive CE input data from ${in_file.name}" >
 		    <filter>naive_output_cond['naive_output'] == "yes"</filter>
+		    <filter>class_filter_cond['class_filter'] != "101_101"</filter>
+		</data>
+		<data format="imgt_archive" name="naive_output_ca" label = "Naive input data from ${in_file.name}" >
+		    <filter>naive_output_cond['naive_output'] == "yes"</filter>
+		    <filter>class_filter_cond['class_filter'] == "101_101"</filter>
 		</data>
 	</outputs>
 	<citations>