Mercurial > repos > davidvanzessen > shm_csr
diff change_o/makedb.sh @ 82:a103134ee6e0 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Thu, 25 Feb 2021 10:32:32 +0000 |
| parents | b6f9a640e098 |
| children |
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--- a/change_o/makedb.sh Fri Feb 19 15:10:54 2021 +0000 +++ b/change_o/makedb.sh Thu Feb 25 10:32:32 2021 +0000 @@ -1,36 +1,36 @@ -#!/bin/bash -dir="$(cd "$(dirname "$0")" && pwd)" - -input=$1 -noparse=$2 -scores=$3 -regions=$4 -output=$5 - -if [ "true" == "$noparse" ] ; then - noparse="--noparse" -else - noparse="" -fi - -if [ "true" == "$scores" ] ; then - scores="--scores" -else - scores="" -fi - -if [ "true" == "$regions" ] ; then - regions="--regions" -else - regions="" -fi - -mkdir $PWD/outdir - -echo "makedb: $PWD/outdir" - -MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions - -mv $PWD/outdir/output_db-pass.tab $output - -rm -rf $PWD/outdir/ +#!/bin/bash +dir="$(cd "$(dirname "$0")" && pwd)" + +input=$1 +noparse=$2 +scores=$3 +regions=$4 +output=$5 + +if [ "true" == "$noparse" ] ; then + noparse="--noparse" +else + noparse="" +fi + +if [ "true" == "$scores" ] ; then + scores="--scores" +else + scores="" +fi + +if [ "true" == "$regions" ] ; then + regions="--regions" +else + regions="" +fi + +mkdir $PWD/outdir + +echo "makedb: $PWD/outdir" + +MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions + +mv $PWD/outdir/output_db-pass.tab $output + +rm -rf $PWD/outdir/