diff change_o/makedb.sh @ 81:b6f9a640e098 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/change_o/makedb.sh	Fri Feb 19 15:10:54 2021 +0000
@@ -0,0 +1,36 @@
+#!/bin/bash
+dir="$(cd "$(dirname "$0")" && pwd)"
+
+input=$1
+noparse=$2
+scores=$3
+regions=$4
+output=$5
+
+if [ "true" == "$noparse" ] ; then
+	noparse="--noparse"
+else
+	noparse=""
+fi
+
+if [ "true" == "$scores" ] ; then
+	scores="--scores"
+else
+	scores=""
+fi
+
+if [ "true" == "$regions" ] ; then
+	regions="--regions"
+else
+	regions=""
+fi
+
+mkdir $PWD/outdir
+
+echo "makedb: $PWD/outdir"
+
+MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions
+
+mv $PWD/outdir/output_db-pass.tab $output
+
+rm -rf $PWD/outdir/