Mercurial > repos > davidvanzessen > shm_csr
view change_o/makedb.sh @ 35:744e5e2e3556 draft
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author | davidvanzessen |
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date | Fri, 16 Dec 2016 10:00:10 -0500 |
parents | c33d93683a09 |
children | c787e79e8b90 |
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#!/bin/bash dir="$(cd "$(dirname "$0")" && pwd)" input=$1 noparse=$2 scores=$3 regions=$4 output=$5 if [ "true" == "$noparse" ] ; then noparse="--noparse" else noparse="" fi if [ "true" == "$scores" ] ; then scores="--scores" else scores="" fi if [ "true" == "$regions" ] ; then regions="--regions" else regions="" fi mkdir $PWD/outdir echo "makedb: $PWD/outdir" python3 $dir/MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions #/data/users/david/anaconda3/bin/python $dir/MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions #/home/galaxy/anaconda3/bin/python $dir/MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions mv $PWD/outdir/output_db-pass.tab $output rm -rf $PWD/outdir/