Mercurial > repos > davidvanzessen > shm_csr

version 1.6.0
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+ Faster runtime due to faster gene identification, sequence overview creation
  and IMGT TAR archive creation.
+ Two extra IMGT files are provided. One for IGM with less than 2% mutations
  (naive) and one for IGM with more than 2% mutations (naive memory).
+ All IMGT files per sequence class are always provided regardless of how the
  ``Fast`` option is set. Previously this had to be set to ``no``.
+ Fix a bug in sequence overview where links to unmatched sequences where not
  working properly in the by_id.html file.

version 1.5.0
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+ Add an option to download all output files in a zip file.

version 1.4.0
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+ Fix a bug where synonymous mutations where incorrectly parsed.
+ Use a container from biocontainers.

version 1.3.3
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+ Fix a bug where tandem lengths were incorrectly calculated.

version 1.3.2
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+ Fix a bug where the file removal process caused errors.

version 1.3.1
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+ Fix issues with container discovery

version 1.3.0
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+ Add missing dependencies to the requirements section.

version 1.2.0
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+ Add a container in which the tool can execute.
+ Remove redundant files after execution.

version 1.1.0
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+ Added changeo as a dependency. Porting to python3 was necessary to achieve
  this. This will make sure the shm_csr package can be installed on all
  galaxies.
+ Make sure the wrapper script runs with `set -e -o pipefail` and fails on
  error.
+ Updated all python scripts to work on python3
author	rhpvorderman
date	Mon, 12 Dec 2022 12:32:44 +0000
parents	f387cc1580c6
children	8fcf31272f6e