Mercurial > repos > dawe > srf2fastq

comparison srf2fastq/io_lib-1.12.2/tests/data/both.run/4_ILLUMINA_GA_FIRECREST_PARAMS.txt @ 0:d901c9f41a6a default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:d901c9f41a6a
1 <?xml version="1.0"?>
2 <ImageAnalysis>
3 <Run Name="C2-37_Firecrest1.9.2_19-08-2008_single">
4 <Cycles First="2" Last="37" Number="36" />
5 <ImageParameters>
6 <AutoOffsetFlag>1</AutoOffsetFlag>
7 <AutoSizeFlag>0</AutoSizeFlag>
8 <DataOffsetFile>/staging/IL9/analysis/080813_IL9_1213/Data/default_offsets.txt</DataOffsetFile>
9 <Fwhm>2.700000</Fwhm>
10 <InstrumentOffsetFile>/staging/IL9/analysis/Instruments/HWI-EAS130/default_offsets.txt</InstrumentOffsetFile>
11 <OffsetFile>/staging/IL9/analysis/Instruments/HWI-EAS130/default_offsets.txt</OffsetFile>
12 <Offsets X="0.000000" Y="0.000000" />
13 <Offsets X="-1.840000" Y="0.950000" />
14 <Offsets X="-0.010000" Y="0.800000" />
15 <Offsets X="1.330000" Y="3.170000" />
16 <RemappingDistance>1.500000</RemappingDistance>
17 <SizeFile />
18 <Threshold>4.000000</Threshold>
19 </ImageParameters>
20 <RunParameters>
21 <AutoCycleFlag>1</AutoCycleFlag>
22 <BasecallFlag>1</BasecallFlag>
23 <Compression>gzip</Compression>
24 <CompressionSuffix>.gz</CompressionSuffix>
25 <Deblocked>0</Deblocked>
26 <DebugFlag>0</DebugFlag>
27 <ImagingReads Index="1">
28 <FirstCycle>1</FirstCycle>
29 <LastCycle>37</LastCycle>
30 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
31 </ImagingReads>
32 <Instrument>HWI-EAS130</Instrument>
33 <MakeFlag>1</MakeFlag>
34 <MaxCycle>-1</MaxCycle>
35 <MinCycle>-1</MinCycle>
36 <Reads Index="1">
37 <FirstCycle>1</FirstCycle>
38 <LastCycle>36</LastCycle>
39 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
40 </Reads>
41 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
42 <SelectedCycles>2</SelectedCycles>
43 <SelectedCycles>3</SelectedCycles>
44 <SelectedCycles>4</SelectedCycles>
45 <SelectedCycles>5</SelectedCycles>
46 <SelectedCycles>6</SelectedCycles>
47 <SelectedCycles>7</SelectedCycles>
48 <SelectedCycles>8</SelectedCycles>
49 <SelectedCycles>9</SelectedCycles>
50 <SelectedCycles>10</SelectedCycles>
51 <SelectedCycles>11</SelectedCycles>
52 <SelectedCycles>12</SelectedCycles>
53 <SelectedCycles>13</SelectedCycles>
54 <SelectedCycles>14</SelectedCycles>
55 <SelectedCycles>15</SelectedCycles>
56 <SelectedCycles>16</SelectedCycles>
57 <SelectedCycles>17</SelectedCycles>
58 <SelectedCycles>18</SelectedCycles>
59 <SelectedCycles>19</SelectedCycles>
60 <SelectedCycles>20</SelectedCycles>
61 <SelectedCycles>21</SelectedCycles>
62 <SelectedCycles>22</SelectedCycles>
63 <SelectedCycles>23</SelectedCycles>
64 <SelectedCycles>24</SelectedCycles>
65 <SelectedCycles>25</SelectedCycles>
66 <SelectedCycles>26</SelectedCycles>
67 <SelectedCycles>27</SelectedCycles>
68 <SelectedCycles>28</SelectedCycles>
69 <SelectedCycles>29</SelectedCycles>
70 <SelectedCycles>30</SelectedCycles>
71 <SelectedCycles>31</SelectedCycles>
72 <SelectedCycles>32</SelectedCycles>
73 <SelectedCycles>33</SelectedCycles>
74 <SelectedCycles>34</SelectedCycles>
75 <SelectedCycles>35</SelectedCycles>
76 <SelectedCycles>36</SelectedCycles>
77 <SelectedCycles>37</SelectedCycles>
78 <SelectedFolders />
79 <SelectedTiles>s_[12345678]_[0-9][0-9][02468]1</SelectedTiles>
80 </RunParameters>
81 <Software Name="Firecrest" Version="1.9.2" />
82 <TileSelection>
83 <Lane Index="1">
84 <Sample>s</Sample>
85 <Tile>1</Tile>
86 <Tile>21</Tile>
87 <Tile>41</Tile>
88 <Tile>61</Tile>
89 <Tile>81</Tile>
90 <Tile>101</Tile>
91 <Tile>121</Tile>
92 <Tile>141</Tile>
93 <Tile>161</Tile>
94 <Tile>181</Tile>
95 <Tile>201</Tile>
96 <Tile>221</Tile>
97 <Tile>241</Tile>
98 <Tile>261</Tile>
99 <Tile>281</Tile>
100 <Tile>301</Tile>
101 <Tile>321</Tile>
102 </Lane>
103 <Lane Index="2">
104 <Sample>s</Sample>
105 <Tile>1</Tile>
106 <Tile>21</Tile>
107 <Tile>41</Tile>
108 <Tile>61</Tile>
109 <Tile>81</Tile>
110 <Tile>101</Tile>
111 <Tile>121</Tile>
112 <Tile>141</Tile>
113 <Tile>161</Tile>
114 <Tile>181</Tile>
115 <Tile>201</Tile>
116 <Tile>221</Tile>
117 <Tile>241</Tile>
118 <Tile>261</Tile>
119 <Tile>281</Tile>
120 <Tile>301</Tile>
121 <Tile>321</Tile>
122 </Lane>
123 <Lane Index="3">
124 <Sample>s</Sample>
125 <Tile>1</Tile>
126 <Tile>21</Tile>
127 <Tile>41</Tile>
128 <Tile>61</Tile>
129 <Tile>81</Tile>
130 <Tile>101</Tile>
131 <Tile>121</Tile>
132 <Tile>141</Tile>
133 <Tile>161</Tile>
134 <Tile>181</Tile>
135 <Tile>201</Tile>
136 <Tile>221</Tile>
137 <Tile>241</Tile>
138 <Tile>261</Tile>
139 <Tile>281</Tile>
140 <Tile>301</Tile>
141 <Tile>321</Tile>
142 </Lane>
143 <Lane Index="4">
144 <Sample>s</Sample>
145 <Tile>1</Tile>
146 <Tile>21</Tile>
147 <Tile>41</Tile>
148 <Tile>61</Tile>
149 <Tile>81</Tile>
150 <Tile>101</Tile>
151 <Tile>121</Tile>
152 <Tile>141</Tile>
153 <Tile>161</Tile>
154 <Tile>181</Tile>
155 <Tile>201</Tile>
156 <Tile>221</Tile>
157 <Tile>241</Tile>
158 <Tile>261</Tile>
159 <Tile>281</Tile>
160 <Tile>301</Tile>
161 <Tile>321</Tile>
162 </Lane>
163 <Lane Index="5">
164 <Sample>s</Sample>
165 <Tile>1</Tile>
166 <Tile>21</Tile>
167 <Tile>41</Tile>
168 <Tile>61</Tile>
169 <Tile>81</Tile>
170 <Tile>101</Tile>
171 <Tile>121</Tile>
172 <Tile>141</Tile>
173 <Tile>161</Tile>
174 <Tile>181</Tile>
175 <Tile>201</Tile>
176 <Tile>221</Tile>
177 <Tile>241</Tile>
178 <Tile>261</Tile>
179 <Tile>281</Tile>
180 <Tile>301</Tile>
181 <Tile>321</Tile>
182 </Lane>
183 <Lane Index="6">
184 <Sample>s</Sample>
185 <Tile>1</Tile>
186 <Tile>21</Tile>
187 <Tile>41</Tile>
188 <Tile>61</Tile>
189 <Tile>81</Tile>
190 <Tile>101</Tile>
191 <Tile>121</Tile>
192 <Tile>141</Tile>
193 <Tile>161</Tile>
194 <Tile>181</Tile>
195 <Tile>201</Tile>
196 <Tile>221</Tile>
197 <Tile>241</Tile>
198 <Tile>261</Tile>
199 <Tile>281</Tile>
200 <Tile>301</Tile>
201 <Tile>321</Tile>
202 </Lane>
203 <Lane Index="7">
204 <Sample>s</Sample>
205 <Tile>1</Tile>
206 <Tile>21</Tile>
207 <Tile>41</Tile>
208 <Tile>61</Tile>
209 <Tile>81</Tile>
210 <Tile>101</Tile>
211 <Tile>121</Tile>
212 <Tile>141</Tile>
213 <Tile>161</Tile>
214 <Tile>181</Tile>
215 <Tile>201</Tile>
216 <Tile>221</Tile>
217 <Tile>241</Tile>
218 <Tile>261</Tile>
219 <Tile>281</Tile>
220 <Tile>301</Tile>
221 <Tile>321</Tile>
222 </Lane>
223 <Lane Index="8">
224 <Sample>s</Sample>
225 <Tile>1</Tile>
226 <Tile>21</Tile>
227 <Tile>41</Tile>
228 <Tile>61</Tile>
229 <Tile>81</Tile>
230 <Tile>101</Tile>
231 <Tile>121</Tile>
232 <Tile>141</Tile>
233 <Tile>161</Tile>
234 <Tile>181</Tile>
235 <Tile>201</Tile>
236 <Tile>221</Tile>
237 <Tile>241</Tile>
238 <Tile>261</Tile>
239 <Tile>281</Tile>
240 <Tile>301</Tile>
241 <Tile>321</Tile>
242 </Lane>
243 </TileSelection>
244 <Time>
245 <Start>19-08-08 09:15:06 BST</Start>
246 </Time>
247 <UsedCycleFolders>C2.1,C3.1,C4.1,C5.1,C6.1,C7.1,C8.1,C9.1,C10.1,C11.1,C12.1,C13.1,C14.1,C15.1,C16.1,C17.1,C18.1,C19.1,C20.1,C21.1,C22.1,C23.1,C24.1,C25.1,C26.1,C27.1,C28.1,C29.1,C30.1,C31.1,C32.1,C33.1,C34.1,C35.1,C36.1,C37.1</UsedCycleFolders>
248 <User Name="single" />
249 </Run>
250 <Run Name="C2-37_Firecrest1.9.2_22-08-2008_single">
251 <Cycles First="2" Last="37" Number="36" />
252 <ImageParameters>
253 <AutoOffsetFlag>1</AutoOffsetFlag>
254 <AutoSizeFlag>0</AutoSizeFlag>
255 <DataOffsetFile>/staging/IL9/analysis/080813_IL9_1213/Data/default_offsets.txt</DataOffsetFile>
256 <Fwhm>2.700000</Fwhm>
257 <InstrumentOffsetFile />
258 <OffsetFile>/staging/IL9/analysis/080813_IL9_1213/Data/default_offsets.txt</OffsetFile>
259 <Offsets X="0.000000" Y="0.000000" />
260 <Offsets X="-1.830000" Y="0.950000" />
261 <Offsets X="-0.070000" Y="0.800000" />
262 <Offsets X="1.260000" Y="3.170000" />
263 <RemappingDistance>1.500000</RemappingDistance>
264 <SizeFile />
265 <Threshold>4.000000</Threshold>
266 </ImageParameters>
267 <RunParameters>
268 <AutoCycleFlag>1</AutoCycleFlag>
269 <BasecallFlag>1</BasecallFlag>
270 <Compression>gzip</Compression>
271 <CompressionSuffix>.gz</CompressionSuffix>
272 <Deblocked>0</Deblocked>
273 <DebugFlag>0</DebugFlag>
274 <ImagingReads Index="1">
275 <FirstCycle>1</FirstCycle>
276 <LastCycle>37</LastCycle>
277 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
278 </ImagingReads>
279 <Instrument>HWI-EAS130</Instrument>
280 <MakeFlag>1</MakeFlag>
281 <MaxCycle>-1</MaxCycle>
282 <MinCycle>-1</MinCycle>
283 <Reads Index="1">
284 <FirstCycle>1</FirstCycle>
285 <LastCycle>36</LastCycle>
286 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
287 </Reads>
288 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
289 <SelectedCycles>2</SelectedCycles>
290 <SelectedCycles>3</SelectedCycles>
291 <SelectedCycles>4</SelectedCycles>
292 <SelectedCycles>5</SelectedCycles>
293 <SelectedCycles>6</SelectedCycles>
294 <SelectedCycles>7</SelectedCycles>
295 <SelectedCycles>8</SelectedCycles>
296 <SelectedCycles>9</SelectedCycles>
297 <SelectedCycles>10</SelectedCycles>
298 <SelectedCycles>11</SelectedCycles>
299 <SelectedCycles>12</SelectedCycles>
300 <SelectedCycles>13</SelectedCycles>
301 <SelectedCycles>14</SelectedCycles>
302 <SelectedCycles>15</SelectedCycles>
303 <SelectedCycles>16</SelectedCycles>
304 <SelectedCycles>17</SelectedCycles>
305 <SelectedCycles>18</SelectedCycles>
306 <SelectedCycles>19</SelectedCycles>
307 <SelectedCycles>20</SelectedCycles>
308 <SelectedCycles>21</SelectedCycles>
309 <SelectedCycles>22</SelectedCycles>
310 <SelectedCycles>23</SelectedCycles>
311 <SelectedCycles>24</SelectedCycles>
312 <SelectedCycles>25</SelectedCycles>
313 <SelectedCycles>26</SelectedCycles>
314 <SelectedCycles>27</SelectedCycles>
315 <SelectedCycles>28</SelectedCycles>
316 <SelectedCycles>29</SelectedCycles>
317 <SelectedCycles>30</SelectedCycles>
318 <SelectedCycles>31</SelectedCycles>
319 <SelectedCycles>32</SelectedCycles>
320 <SelectedCycles>33</SelectedCycles>
321 <SelectedCycles>34</SelectedCycles>
322 <SelectedCycles>35</SelectedCycles>
323 <SelectedCycles>36</SelectedCycles>
324 <SelectedCycles>37</SelectedCycles>
325 <SelectedFolders />
326 <SelectedTiles>s_[12345678]_[0-9][0-9][02468]1</SelectedTiles>
327 </RunParameters>
328 <Software Name="Firecrest" Version="1.9.2" />
329 <TileSelection>
330 <Lane Index="1">
331 <Sample>s</Sample>
332 <Tile>1</Tile>
333 <Tile>21</Tile>
334 <Tile>41</Tile>
335 <Tile>61</Tile>
336 <Tile>81</Tile>
337 <Tile>101</Tile>
338 <Tile>121</Tile>
339 <Tile>141</Tile>
340 <Tile>161</Tile>
341 <Tile>181</Tile>
342 <Tile>201</Tile>
343 <Tile>221</Tile>
344 <Tile>241</Tile>
345 <Tile>261</Tile>
346 <Tile>281</Tile>
347 <Tile>301</Tile>
348 <Tile>321</Tile>
349 </Lane>
350 <Lane Index="2">
351 <Sample>s</Sample>
352 <Tile>1</Tile>
353 <Tile>21</Tile>
354 <Tile>41</Tile>
355 <Tile>61</Tile>
356 <Tile>81</Tile>
357 <Tile>101</Tile>
358 <Tile>121</Tile>
359 <Tile>141</Tile>
360 <Tile>161</Tile>
361 <Tile>181</Tile>
362 <Tile>201</Tile>
363 <Tile>221</Tile>
364 <Tile>241</Tile>
365 <Tile>261</Tile>
366 <Tile>281</Tile>
367 <Tile>301</Tile>
368 <Tile>321</Tile>
369 </Lane>
370 <Lane Index="3">
371 <Sample>s</Sample>
372 <Tile>1</Tile>
373 <Tile>21</Tile>
374 <Tile>41</Tile>
375 <Tile>61</Tile>
376 <Tile>81</Tile>
377 <Tile>101</Tile>
378 <Tile>121</Tile>
379 <Tile>141</Tile>
380 <Tile>161</Tile>
381 <Tile>181</Tile>
382 <Tile>201</Tile>
383 <Tile>221</Tile>
384 <Tile>241</Tile>
385 <Tile>261</Tile>
386 <Tile>281</Tile>
387 <Tile>301</Tile>
388 <Tile>321</Tile>
389 </Lane>
390 <Lane Index="4">
391 <Sample>s</Sample>
392 <Tile>1</Tile>
393 <Tile>21</Tile>
394 <Tile>41</Tile>
395 <Tile>61</Tile>
396 <Tile>81</Tile>
397 <Tile>101</Tile>
398 <Tile>121</Tile>
399 <Tile>141</Tile>
400 <Tile>161</Tile>
401 <Tile>181</Tile>
402 <Tile>201</Tile>
403 <Tile>221</Tile>
404 <Tile>241</Tile>
405 <Tile>261</Tile>
406 <Tile>281</Tile>
407 <Tile>301</Tile>
408 <Tile>321</Tile>
409 </Lane>
410 <Lane Index="5">
411 <Sample>s</Sample>
412 <Tile>1</Tile>
413 <Tile>21</Tile>
414 <Tile>41</Tile>
415 <Tile>61</Tile>
416 <Tile>81</Tile>
417 <Tile>101</Tile>
418 <Tile>121</Tile>
419 <Tile>141</Tile>
420 <Tile>161</Tile>
421 <Tile>181</Tile>
422 <Tile>201</Tile>
423 <Tile>221</Tile>
424 <Tile>241</Tile>
425 <Tile>261</Tile>
426 <Tile>281</Tile>
427 <Tile>301</Tile>
428 <Tile>321</Tile>
429 </Lane>
430 <Lane Index="6">
431 <Sample>s</Sample>
432 <Tile>1</Tile>
433 <Tile>21</Tile>
434 <Tile>41</Tile>
435 <Tile>61</Tile>
436 <Tile>81</Tile>
437 <Tile>101</Tile>
438 <Tile>121</Tile>
439 <Tile>141</Tile>
440 <Tile>161</Tile>
441 <Tile>181</Tile>
442 <Tile>201</Tile>
443 <Tile>221</Tile>
444 <Tile>241</Tile>
445 <Tile>261</Tile>
446 <Tile>281</Tile>
447 <Tile>301</Tile>
448 <Tile>321</Tile>
449 </Lane>
450 <Lane Index="7">
451 <Sample>s</Sample>
452 <Tile>1</Tile>
453 <Tile>21</Tile>
454 <Tile>41</Tile>
455 <Tile>61</Tile>
456 <Tile>81</Tile>
457 <Tile>101</Tile>
458 <Tile>121</Tile>
459 <Tile>141</Tile>
460 <Tile>161</Tile>
461 <Tile>181</Tile>
462 <Tile>201</Tile>
463 <Tile>221</Tile>
464 <Tile>241</Tile>
465 <Tile>261</Tile>
466 <Tile>281</Tile>
467 <Tile>301</Tile>
468 <Tile>321</Tile>
469 </Lane>
470 <Lane Index="8">
471 <Sample>s</Sample>
472 <Tile>1</Tile>
473 <Tile>21</Tile>
474 <Tile>41</Tile>
475 <Tile>61</Tile>
476 <Tile>81</Tile>
477 <Tile>101</Tile>
478 <Tile>121</Tile>
479 <Tile>141</Tile>
480 <Tile>161</Tile>
481 <Tile>181</Tile>
482 <Tile>201</Tile>
483 <Tile>221</Tile>
484 <Tile>241</Tile>
485 <Tile>261</Tile>
486 <Tile>281</Tile>
487 <Tile>301</Tile>
488 <Tile>321</Tile>
489 </Lane>
490 </TileSelection>
491 <Time>
492 <Start>22-08-08 11:11:01 BST</Start>
493 </Time>
494 <UsedCycleFolders>C2.1,C3.1,C4.1,C5.1,C6.1,C7.1,C8.1,C9.1,C10.1,C11.1,C12.1,C13.1,C14.1,C15.1,C16.1,C17.1,C18.1,C19.1,C20.1,C21.1,C22.1,C23.1,C24.1,C25.1,C26.1,C27.1,C28.1,C29.1,C30.1,C31.1,C32.1,C33.1,C34.1,C35.1,C36.1,C37.1</UsedCycleFolders>
495 <User Name="single" />
496 </Run>
497 <Run Name="C2-37,39-74_Firecrest1.9.2_22-08-2008_auto">
498 <Cycles First="2" Last="74" Number="72" />
499 <ImageParameters>
500 <AutoOffsetFlag>1</AutoOffsetFlag>
501 <AutoSizeFlag>0</AutoSizeFlag>
502 <DataOffsetFile>/staging/IL9/analysis/080813_IL9_1213/Data/default_offsets.txt</DataOffsetFile>
503 <Fwhm>2.700000</Fwhm>
504 <InstrumentOffsetFile />
505 <OffsetFile>/staging/IL9/analysis/080813_IL9_1213/Data/default_offsets.txt</OffsetFile>
506 <Offsets X="0.000000" Y="0.000000" />
507 <Offsets X="-1.830000" Y="0.950000" />
508 <Offsets X="-0.070000" Y="0.800000" />
509 <Offsets X="1.260000" Y="3.170000" />
510 <RemappingDistance>1.500000</RemappingDistance>
511 <SizeFile />
512 <Threshold>4.000000</Threshold>
513 </ImageParameters>
514 <RunParameters>
515 <AutoCycleFlag>1</AutoCycleFlag>
516 <BasecallFlag>1</BasecallFlag>
517 <Compression>gzip</Compression>
518 <CompressionSuffix>.gz</CompressionSuffix>
519 <Deblocked>0</Deblocked>
520 <DebugFlag>0</DebugFlag>
521 <ImagingReads Index="1">
522 <FirstCycle>1</FirstCycle>
523 <LastCycle>37</LastCycle>
524 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
525 </ImagingReads>
526 <ImagingReads Index="2">
527 <FirstCycle>38</FirstCycle>
528 <LastCycle>74</LastCycle>
529 <RunFolder>/staging/IL9/analysis/080818_IL9_1232</RunFolder>
530 </ImagingReads>
531 <Instrument>HWI-EAS130</Instrument>
532 <MakeFlag>1</MakeFlag>
533 <MaxCycle>-1</MaxCycle>
534 <MinCycle>-1</MinCycle>
535 <Reads Index="1">
536 <FirstCycle>1</FirstCycle>
537 <LastCycle>36</LastCycle>
538 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
539 </Reads>
540 <Reads Index="2">
541 <FirstCycle>37</FirstCycle>
542 <LastCycle>72</LastCycle>
543 <RunFolder>/staging/IL9/analysis/080818_IL9_1232</RunFolder>
544 </Reads>
545 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
546 <SelectedCycles>2</SelectedCycles>
547 <SelectedCycles>3</SelectedCycles>
548 <SelectedCycles>4</SelectedCycles>
549 <SelectedCycles>5</SelectedCycles>
550 <SelectedCycles>6</SelectedCycles>
551 <SelectedCycles>7</SelectedCycles>
552 <SelectedCycles>8</SelectedCycles>
553 <SelectedCycles>9</SelectedCycles>
554 <SelectedCycles>10</SelectedCycles>
555 <SelectedCycles>11</SelectedCycles>
556 <SelectedCycles>12</SelectedCycles>
557 <SelectedCycles>13</SelectedCycles>
558 <SelectedCycles>14</SelectedCycles>
559 <SelectedCycles>15</SelectedCycles>
560 <SelectedCycles>16</SelectedCycles>
561 <SelectedCycles>17</SelectedCycles>
562 <SelectedCycles>18</SelectedCycles>
563 <SelectedCycles>19</SelectedCycles>
564 <SelectedCycles>20</SelectedCycles>
565 <SelectedCycles>21</SelectedCycles>
566 <SelectedCycles>22</SelectedCycles>
567 <SelectedCycles>23</SelectedCycles>
568 <SelectedCycles>24</SelectedCycles>
569 <SelectedCycles>25</SelectedCycles>
570 <SelectedCycles>26</SelectedCycles>
571 <SelectedCycles>27</SelectedCycles>
572 <SelectedCycles>28</SelectedCycles>
573 <SelectedCycles>29</SelectedCycles>
574 <SelectedCycles>30</SelectedCycles>
575 <SelectedCycles>31</SelectedCycles>
576 <SelectedCycles>32</SelectedCycles>
577 <SelectedCycles>33</SelectedCycles>
578 <SelectedCycles>34</SelectedCycles>
579 <SelectedCycles>35</SelectedCycles>
580 <SelectedCycles>36</SelectedCycles>
581 <SelectedCycles>37</SelectedCycles>
582 <SelectedFolders />
583 <SelectedTiles />
584 </RunParameters>
585 <Software Name="Firecrest" Version="1.9.2" />
586 <TileSelection>
587 <Lane Index="1">
588 <Sample>s</Sample>
589 <TileRange Max="330" Min="1" />
590 </Lane>
591 <Lane Index="2">
592 <Sample>s</Sample>
593 <TileRange Max="330" Min="1" />
594 </Lane>
595 <Lane Index="3">
596 <Sample>s</Sample>
597 <TileRange Max="330" Min="1" />
598 </Lane>
599 <Lane Index="4">
600 <Sample>s</Sample>
601 <TileRange Max="330" Min="1" />
602 </Lane>
603 <Lane Index="5">
604 <Sample>s</Sample>
605 <TileRange Max="330" Min="1" />
606 </Lane>
607 <Lane Index="6">
608 <Sample>s</Sample>
609 <TileRange Max="330" Min="1" />
610 </Lane>
611 <Lane Index="7">
612 <Sample>s</Sample>
613 <TileRange Max="330" Min="1" />
614 </Lane>
615 <Lane Index="8">
616 <Sample>s</Sample>
617 <TileRange Max="330" Min="1" />
618 </Lane>
619 </TileSelection>
620 <Time>
621 <Start>22-08-08 12:20:16 BST</Start>
622 </Time>
623 <UsedCycleFolders>C2.1,C3.1,C4.1,C5.1,C6.1,C7.1,C8.1,C9.1,C10.1,C11.1,C12.1,C13.1,C14.1,C15.1,C16.1,C17.1,C18.1,C19.1,C20.1,C21.1,C22.1,C23.1,C24.1,C25.1,C26.1,C27.1,C28.1,C29.1,C30.1,C31.1,C32.1,C33.1,C34.1,C35.1,C36.1,C37.1</UsedCycleFolders>
624 <User Name="auto" />
625 </Run>
626 <Run Name="C1-37_Firecrest1.9.5_27-08-2008_single">
627 <Cycles First="1" Last="37" Number="37" />
628 <ImageParameters>
629 <AutoOffsetFlag>1</AutoOffsetFlag>
630 <AutoSizeFlag>0</AutoSizeFlag>
631 <DataOffsetFile>/staging/IL9/analysis/080813_IL9_1213/Data/default_offsets.txt</DataOffsetFile>
632 <Fwhm>2.700000</Fwhm>
633 <InstrumentOffsetFile />
634 <OffsetFile>/staging/IL9/analysis/080813_IL9_1213/Data/default_offsets.txt</OffsetFile>
635 <Offsets X="0.000000" Y="0.000000" />
636 <Offsets X="-1.820000" Y="0.950000" />
637 <Offsets X="-0.080000" Y="0.810000" />
638 <Offsets X="1.250000" Y="3.180000" />
639 <RemappingDistance>1.500000</RemappingDistance>
640 <SizeFile />
641 <Threshold>4.000000</Threshold>
642 </ImageParameters>
643 <RunParameters>
644 <AutoCycleFlag>0</AutoCycleFlag>
645 <BasecallFlag>1</BasecallFlag>
646 <Compression>gzip</Compression>
647 <CompressionSuffix>.gz</CompressionSuffix>
648 <Deblocked>0</Deblocked>
649 <DebugFlag>0</DebugFlag>
650 <FirstRunOnlyFlag>0</FirstRunOnlyFlag>
651 <ImagingReads Index="1">
652 <FirstCycle>1</FirstCycle>
653 <LastCycle>37</LastCycle>
654 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
655 </ImagingReads>
656 <Instrument>HWI-EAS130</Instrument>
657 <MakeFlag>1</MakeFlag>
658 <MaxCycle>-1</MaxCycle>
659 <MinCycle>-1</MinCycle>
660 <Reads Index="1">
661 <FirstCycle>1</FirstCycle>
662 <LastCycle>37</LastCycle>
663 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
664 </Reads>
665 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
666 <SelectedCycles>1</SelectedCycles>
667 <SelectedCycles>2</SelectedCycles>
668 <SelectedCycles>3</SelectedCycles>
669 <SelectedCycles>4</SelectedCycles>
670 <SelectedCycles>5</SelectedCycles>
671 <SelectedCycles>6</SelectedCycles>
672 <SelectedCycles>7</SelectedCycles>
673 <SelectedCycles>8</SelectedCycles>
674 <SelectedCycles>9</SelectedCycles>
675 <SelectedCycles>10</SelectedCycles>
676 <SelectedCycles>11</SelectedCycles>
677 <SelectedCycles>12</SelectedCycles>
678 <SelectedCycles>13</SelectedCycles>
679 <SelectedCycles>14</SelectedCycles>
680 <SelectedCycles>15</SelectedCycles>
681 <SelectedCycles>16</SelectedCycles>
682 <SelectedCycles>17</SelectedCycles>
683 <SelectedCycles>18</SelectedCycles>
684 <SelectedCycles>19</SelectedCycles>
685 <SelectedCycles>20</SelectedCycles>
686 <SelectedCycles>21</SelectedCycles>
687 <SelectedCycles>22</SelectedCycles>
688 <SelectedCycles>23</SelectedCycles>
689 <SelectedCycles>24</SelectedCycles>
690 <SelectedCycles>25</SelectedCycles>
691 <SelectedCycles>26</SelectedCycles>
692 <SelectedCycles>27</SelectedCycles>
693 <SelectedCycles>28</SelectedCycles>
694 <SelectedCycles>29</SelectedCycles>
695 <SelectedCycles>30</SelectedCycles>
696 <SelectedCycles>31</SelectedCycles>
697 <SelectedCycles>32</SelectedCycles>
698 <SelectedCycles>33</SelectedCycles>
699 <SelectedCycles>34</SelectedCycles>
700 <SelectedCycles>35</SelectedCycles>
701 <SelectedCycles>36</SelectedCycles>
702 <SelectedCycles>37</SelectedCycles>
703 <SelectedFolders />
704 <SelectedTiles>s_[12345678]_[0-9][0-9][02468]1</SelectedTiles>
705 </RunParameters>
706 <Software Name="Firecrest" Version="1.9.5" />
707 <TileSelection>
708 <Lane Index="1">
709 <Sample>s</Sample>
710 <Tile>1</Tile>
711 <Tile>21</Tile>
712 <Tile>41</Tile>
713 <Tile>61</Tile>
714 <Tile>81</Tile>
715 <Tile>101</Tile>
716 <Tile>121</Tile>
717 <Tile>141</Tile>
718 <Tile>161</Tile>
719 <Tile>181</Tile>
720 <Tile>201</Tile>
721 <Tile>221</Tile>
722 <Tile>241</Tile>
723 <Tile>261</Tile>
724 <Tile>281</Tile>
725 <Tile>301</Tile>
726 <Tile>321</Tile>
727 </Lane>
728 <Lane Index="2">
729 <Sample>s</Sample>
730 <Tile>1</Tile>
731 <Tile>21</Tile>
732 <Tile>41</Tile>
733 <Tile>61</Tile>
734 <Tile>81</Tile>
735 <Tile>101</Tile>
736 <Tile>121</Tile>
737 <Tile>141</Tile>
738 <Tile>161</Tile>
739 <Tile>181</Tile>
740 <Tile>201</Tile>
741 <Tile>221</Tile>
742 <Tile>241</Tile>
743 <Tile>261</Tile>
744 <Tile>281</Tile>
745 <Tile>301</Tile>
746 <Tile>321</Tile>
747 </Lane>
748 <Lane Index="3">
749 <Sample>s</Sample>
750 <Tile>1</Tile>
751 <Tile>21</Tile>
752 <Tile>41</Tile>
753 <Tile>61</Tile>
754 <Tile>81</Tile>
755 <Tile>101</Tile>
756 <Tile>121</Tile>
757 <Tile>141</Tile>
758 <Tile>161</Tile>
759 <Tile>181</Tile>
760 <Tile>201</Tile>
761 <Tile>221</Tile>
762 <Tile>241</Tile>
763 <Tile>261</Tile>
764 <Tile>281</Tile>
765 <Tile>301</Tile>
766 <Tile>321</Tile>
767 </Lane>
768 <Lane Index="4">
769 <Sample>s</Sample>
770 <Tile>1</Tile>
771 <Tile>21</Tile>
772 <Tile>41</Tile>
773 <Tile>61</Tile>
774 <Tile>81</Tile>
775 <Tile>101</Tile>
776 <Tile>121</Tile>
777 <Tile>141</Tile>
778 <Tile>161</Tile>
779 <Tile>181</Tile>
780 <Tile>201</Tile>
781 <Tile>221</Tile>
782 <Tile>241</Tile>
783 <Tile>261</Tile>
784 <Tile>281</Tile>
785 <Tile>301</Tile>
786 <Tile>321</Tile>
787 </Lane>
788 <Lane Index="5">
789 <Sample>s</Sample>
790 <Tile>1</Tile>
791 <Tile>21</Tile>
792 <Tile>41</Tile>
793 <Tile>61</Tile>
794 <Tile>81</Tile>
795 <Tile>101</Tile>
796 <Tile>121</Tile>
797 <Tile>141</Tile>
798 <Tile>161</Tile>
799 <Tile>181</Tile>
800 <Tile>201</Tile>
801 <Tile>221</Tile>
802 <Tile>241</Tile>
803 <Tile>261</Tile>
804 <Tile>281</Tile>
805 <Tile>301</Tile>
806 <Tile>321</Tile>
807 </Lane>
808 <Lane Index="6">
809 <Sample>s</Sample>
810 <Tile>1</Tile>
811 <Tile>21</Tile>
812 <Tile>41</Tile>
813 <Tile>61</Tile>
814 <Tile>81</Tile>
815 <Tile>101</Tile>
816 <Tile>121</Tile>
817 <Tile>141</Tile>
818 <Tile>161</Tile>
819 <Tile>181</Tile>
820 <Tile>201</Tile>
821 <Tile>221</Tile>
822 <Tile>241</Tile>
823 <Tile>261</Tile>
824 <Tile>281</Tile>
825 <Tile>301</Tile>
826 <Tile>321</Tile>
827 </Lane>
828 <Lane Index="7">
829 <Sample>s</Sample>
830 <Tile>1</Tile>
831 <Tile>21</Tile>
832 <Tile>41</Tile>
833 <Tile>61</Tile>
834 <Tile>81</Tile>
835 <Tile>101</Tile>
836 <Tile>121</Tile>
837 <Tile>141</Tile>
838 <Tile>161</Tile>
839 <Tile>181</Tile>
840 <Tile>201</Tile>
841 <Tile>221</Tile>
842 <Tile>241</Tile>
843 <Tile>261</Tile>
844 <Tile>281</Tile>
845 <Tile>301</Tile>
846 <Tile>321</Tile>
847 </Lane>
848 <Lane Index="8">
849 <Sample>s</Sample>
850 <Tile>1</Tile>
851 <Tile>21</Tile>
852 <Tile>41</Tile>
853 <Tile>61</Tile>
854 <Tile>81</Tile>
855 <Tile>101</Tile>
856 <Tile>121</Tile>
857 <Tile>141</Tile>
858 <Tile>161</Tile>
859 <Tile>181</Tile>
860 <Tile>201</Tile>
861 <Tile>221</Tile>
862 <Tile>241</Tile>
863 <Tile>261</Tile>
864 <Tile>281</Tile>
865 <Tile>301</Tile>
866 <Tile>321</Tile>
867 </Lane>
868 </TileSelection>
869 <Time>
870 <Start>27-08-08 17:03:52 BST</Start>
871 </Time>
872 <UsedCycleFolders>C1.1,C2.1,C3.1,C4.1,C5.1,C6.1,C7.1,C8.1,C9.1,C10.1,C11.1,C12.1,C13.1,C14.1,C15.1,C16.1,C17.1,C18.1,C19.1,C20.1,C21.1,C22.1,C23.1,C24.1,C25.1,C26.1,C27.1,C28.1,C29.1,C30.1,C31.1,C32.1,C33.1,C34.1,C35.1,C36.1,C37.1</UsedCycleFolders>
873 <User Name="single" />
874 </Run>
875 <Run Name="C1-74_Firecrest1.9.5_28-08-2008_auto">
876 <Cycles First="1" Last="74" Number="74" />
877 <ImageParameters>
878 <AutoOffsetFlag>1</AutoOffsetFlag>
879 <AutoSizeFlag>0</AutoSizeFlag>
880 <DataOffsetFile>/staging/IL9/analysis/080813_IL9_1213/Data/default_offsets.txt</DataOffsetFile>
881 <Fwhm>2.700000</Fwhm>
882 <InstrumentOffsetFile></InstrumentOffsetFile>
883 <OffsetFile>/staging/IL9/analysis/080813_IL9_1213/Data/default_offsets.txt</OffsetFile>
884 <Offsets X="0.000000" Y="0.000000" />
885 <Offsets X="-1.830000" Y="0.950000" />
886 <Offsets X="-0.070000" Y="0.800000" />
887 <Offsets X="1.260000" Y="3.190000" />
888 <RemappingDistance>1.500000</RemappingDistance>
889 <SizeFile></SizeFile>
890 <Threshold>4.000000</Threshold>
891 </ImageParameters>
892 <RunParameters>
893 <AutoCycleFlag>0</AutoCycleFlag>
894 <BasecallFlag>1</BasecallFlag>
895 <Compression>gzip</Compression>
896 <CompressionSuffix>.gz</CompressionSuffix>
897 <Deblocked>0</Deblocked>
898 <DebugFlag>0</DebugFlag>
899 <FirstRunOnlyFlag>0</FirstRunOnlyFlag>
900 <ImagingReads Index="1">
901 <FirstCycle>1</FirstCycle>
902 <LastCycle>37</LastCycle>
903 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
904 </ImagingReads>
905 <ImagingReads Index="2">
906 <FirstCycle>38</FirstCycle>
907 <LastCycle>74</LastCycle>
908 <RunFolder>/staging/IL9/analysis/080818_IL9_1232</RunFolder>
909 </ImagingReads>
910 <Instrument>HWI-EAS130</Instrument>
911 <MakeFlag>1</MakeFlag>
912 <MaxCycle>-1</MaxCycle>
913 <MinCycle>-1</MinCycle>
914 <Reads Index="1">
915 <FirstCycle>1</FirstCycle>
916 <LastCycle>37</LastCycle>
917 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
918 </Reads>
919 <Reads Index="2">
920 <FirstCycle>38</FirstCycle>
921 <LastCycle>74</LastCycle>
922 <RunFolder>/staging/IL9/analysis/080818_IL9_1232</RunFolder>
923 </Reads>
924 <RunFolder>/staging/IL9/analysis/080813_IL9_1213</RunFolder>
925 <SelectedCycles>1</SelectedCycles>
926 <SelectedCycles>2</SelectedCycles>
927 <SelectedCycles>3</SelectedCycles>
928 <SelectedCycles>4</SelectedCycles>
929 <SelectedCycles>5</SelectedCycles>
930 <SelectedCycles>6</SelectedCycles>
931 <SelectedCycles>7</SelectedCycles>
932 <SelectedCycles>8</SelectedCycles>
933 <SelectedCycles>9</SelectedCycles>
934 <SelectedCycles>10</SelectedCycles>
935 <SelectedCycles>11</SelectedCycles>
936 <SelectedCycles>12</SelectedCycles>
937 <SelectedCycles>13</SelectedCycles>
938 <SelectedCycles>14</SelectedCycles>
939 <SelectedCycles>15</SelectedCycles>
940 <SelectedCycles>16</SelectedCycles>
941 <SelectedCycles>17</SelectedCycles>
942 <SelectedCycles>18</SelectedCycles>
943 <SelectedCycles>19</SelectedCycles>
944 <SelectedCycles>20</SelectedCycles>
945 <SelectedCycles>21</SelectedCycles>
946 <SelectedCycles>22</SelectedCycles>
947 <SelectedCycles>23</SelectedCycles>
948 <SelectedCycles>24</SelectedCycles>
949 <SelectedCycles>25</SelectedCycles>
950 <SelectedCycles>26</SelectedCycles>
951 <SelectedCycles>27</SelectedCycles>
952 <SelectedCycles>28</SelectedCycles>
953 <SelectedCycles>29</SelectedCycles>
954 <SelectedCycles>30</SelectedCycles>
955 <SelectedCycles>31</SelectedCycles>
956 <SelectedCycles>32</SelectedCycles>
957 <SelectedCycles>33</SelectedCycles>
958 <SelectedCycles>34</SelectedCycles>
959 <SelectedCycles>35</SelectedCycles>
960 <SelectedCycles>36</SelectedCycles>
961 <SelectedCycles>37</SelectedCycles>
962 <SelectedCycles>38</SelectedCycles>
963 <SelectedCycles>39</SelectedCycles>
964 <SelectedCycles>40</SelectedCycles>
965 <SelectedCycles>41</SelectedCycles>
966 <SelectedCycles>42</SelectedCycles>
967 <SelectedCycles>43</SelectedCycles>
968 <SelectedCycles>44</SelectedCycles>
969 <SelectedCycles>45</SelectedCycles>
970 <SelectedCycles>46</SelectedCycles>
971 <SelectedCycles>47</SelectedCycles>
972 <SelectedCycles>48</SelectedCycles>
973 <SelectedCycles>49</SelectedCycles>
974 <SelectedCycles>50</SelectedCycles>
975 <SelectedCycles>51</SelectedCycles>
976 <SelectedCycles>52</SelectedCycles>
977 <SelectedCycles>53</SelectedCycles>
978 <SelectedCycles>54</SelectedCycles>
979 <SelectedCycles>55</SelectedCycles>
980 <SelectedCycles>56</SelectedCycles>
981 <SelectedCycles>57</SelectedCycles>
982 <SelectedCycles>58</SelectedCycles>
983 <SelectedCycles>59</SelectedCycles>
984 <SelectedCycles>60</SelectedCycles>
985 <SelectedCycles>61</SelectedCycles>
986 <SelectedCycles>62</SelectedCycles>
987 <SelectedCycles>63</SelectedCycles>
988 <SelectedCycles>64</SelectedCycles>
989 <SelectedCycles>65</SelectedCycles>
990 <SelectedCycles>66</SelectedCycles>
991 <SelectedCycles>67</SelectedCycles>
992 <SelectedCycles>68</SelectedCycles>
993 <SelectedCycles>69</SelectedCycles>
994 <SelectedCycles>70</SelectedCycles>
995 <SelectedCycles>71</SelectedCycles>
996 <SelectedCycles>72</SelectedCycles>
997 <SelectedCycles>73</SelectedCycles>
998 <SelectedCycles>74</SelectedCycles>
999 <SelectedFolders />
1000 <SelectedTiles />
1001 </RunParameters>
1002 <Software Name="Firecrest" Version="1.9.5" />
1003 <TileSelection>
1004 <Lane Index="1">
1005 <Sample>s</Sample>
1006 <TileRange Max="330" Min="1" />
1007 </Lane>
1008 <Lane Index="2">
1009 <Sample>s</Sample>
1010 <TileRange Max="330" Min="1" />
1011 </Lane>
1012 <Lane Index="3">
1013 <Sample>s</Sample>
1014 <TileRange Max="330" Min="1" />
1015 </Lane>
1016 <Lane Index="4">
1017 <Sample>s</Sample>
1018 <TileRange Max="330" Min="1" />
1019 </Lane>
1020 <Lane Index="5">
1021 <Sample>s</Sample>
1022 <TileRange Max="330" Min="1" />
1023 </Lane>
1024 <Lane Index="6">
1025 <Sample>s</Sample>
1026 <TileRange Max="330" Min="1" />
1027 </Lane>
1028 <Lane Index="7">
1029 <Sample>s</Sample>
1030 <TileRange Max="330" Min="1" />
1031 </Lane>
1032 <Lane Index="8">
1033 <Sample>s</Sample>
1034 <TileRange Max="330" Min="1" />
1035 </Lane>
1036 </TileSelection>
1037 <Time>
1038 <Start>28-08-08 10:20:44 BST</Start>
1039 </Time>
1040 <UsedCycleFolders>C1.1,C2.1,C3.1,C4.1,C5.1,C6.1,C7.1,C8.1,C9.1,C10.1,C11.1,C12.1,C13.1,C14.1,C15.1,C16.1,C17.1,C18.1,C19.1,C20.1,C21.1,C22.1,C23.1,C24.1,C25.1,C26.1,C27.1,C28.1,C29.1,C30.1,C31.1,C32.1,C33.1,C34.1,C35.1,C36.1,C37.1</UsedCycleFolders>
1041 <User Name="auto" />
1042 </Run>
1043 </ImageAnalysis>