Mercurial > repos > dawe > srf2fastq
comparison srf2fastq/io_lib-1.12.2/progs/scf_update.c @ 0:d901c9f41a6a default tip
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author | dawe |
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date | Tue, 07 Jun 2011 17:48:05 -0400 |
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-1:000000000000 | 0:d901c9f41a6a |
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1 /* | |
2 * Copyright (c) Medical Research Council 1994. All rights reserved. | |
3 * | |
4 * Permission to use, copy, modify and distribute this software and its | |
5 * documentation for any purpose is hereby granted without fee, provided that | |
6 * this copyright and notice appears in all copies. | |
7 * | |
8 * This file was written by James Bonfield, Simon Dear, Rodger Staden, | |
9 * as part of the Staden Package at the MRC Laboratory of Molecular | |
10 * Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom. | |
11 * | |
12 * MRC disclaims all warranties with regard to this software. | |
13 */ | |
14 | |
15 #include <stdio.h> | |
16 #include <stdlib.h> | |
17 #include <string.h> | |
18 #include <io_lib/scf.h> | |
19 | |
20 /* | |
21 * Update a v2.x SCF files to a v3.x SCF files. | |
22 */ | |
23 | |
24 int main(int argc, char **argv) { | |
25 Scf *scf; | |
26 int version = 3; | |
27 | |
28 if (argc > 2 && strcmp(argv[1], "-v") == 0) { | |
29 version = atoi(argv[2]); | |
30 if (version != 2 && version != 3) { | |
31 fprintf(stderr, "Please specify version 2 or version 3\n"); | |
32 return 1; | |
33 } | |
34 | |
35 argc-=2; | |
36 argv+=2; | |
37 } | |
38 | |
39 if (argc != 3) { | |
40 fprintf(stderr, "Usage: scf_update [-v version] source destination\n"); | |
41 return 1; | |
42 } | |
43 | |
44 if (NULL == (scf = read_scf(argv[1]))) { | |
45 perror(argv[1]); | |
46 return 1; | |
47 } | |
48 | |
49 set_scf_version(version); | |
50 | |
51 if (-1 == write_scf(scf, argv[2])) { | |
52 perror(argv[2]); | |
53 return 1; | |
54 } | |
55 | |
56 scf_deallocate(scf); | |
57 return 0; | |
58 } |