Mercurial > repos > dawe > srf2fastq
comparison srf2fastq/io_lib-1.12.2/tests/srf_filter.test @ 0:d901c9f41a6a default tip
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
| author | dawe |
|---|---|
| date | Tue, 07 Jun 2011 17:48:05 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:d901c9f41a6a |
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| 1 #!/bin/sh | |
| 2 | |
| 3 # Filter out raw data from both.srf and we should get something similar to | |
| 4 # proc.srf. Hard to verify this fully. | |
| 5 $top_builddir/progs/srf_filter -m PROC $srcdir/data/both.srf $outdir/f_proc.srf | |
| 6 $top_builddir/progs/srf_dump_all $srcdir/data/proc.srf > $outdir/proc.dump | |
| 7 $top_builddir/progs/srf_dump_all $outdir/f_proc.srf > $outdir/f_proc.dump | |
| 8 cmp $outdir/proc.dump $outdir/f_proc.dump || exit 1 | |
| 9 | |
| 10 # Also check with srf_info to see that we have the expected number of | |
| 11 # ZTR chunks | |
| 12 $top_builddir/progs/srf_info $srcdir/data/proc.srf|tail -n +2|grep -v 'null index' > $outdir/proc.info | |
| 13 $top_builddir/progs/srf_info $outdir/f_proc.srf|tail -n +2|grep -v 'null index' > $outdir/f_proc.info | |
| 14 cmp $outdir/proc.info $outdir/f_proc.info || exit 1 |