diff srf2fastq/io_lib-1.12.2/io_lib/stdio_hack.h @ 0:d901c9f41a6a default tip

Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/srf2fastq/io_lib-1.12.2/io_lib/stdio_hack.h	Tue Jun 07 17:48:05 2011 -0400
@@ -0,0 +1,74 @@
+#ifndef _STDIO_HACK_H_
+#define _STDIO_HACK_H_
+
+#include <stdio.h>
+#include "io_lib/mFILE.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*
+ * This file will define many of the stdio functions to use the
+ * in-memory versions here. These are sufficient to allow the abi,
+ * scf, etc reading code (but not writing) to transparently operate by
+ * loading the entire file into memory and then doing in-memory
+ * manipulation instead of on-disk manipulation.
+ *
+ * The key use for this though is to allow generation of fake FILE pointers
+ * so that reading from tar files does not requiring writing to disk and
+ * reading back again.
+ */
+
+#define FILE mFILE
+#define fopen mfopen
+#define fclose mfclose
+#define fseek mfseek
+#define ftell mftell
+#define rewind mrewind
+#ifdef feof
+#    undef feof
+#endif
+#define feof mfeof
+#define fread mfread
+#define fwrite mfwrite
+#define fgetc mfgetc
+#define ungetc mungetc
+#define fgets mfgets
+#define fflush mfflush
+#define fprintf mfprintf
+
+#ifdef stdin
+#    undef stdin
+#    undef stdout
+#    undef stderr
+#endif
+#define stdin mstdin()
+#define stdout mstdout()
+#define stderr mstderr()
+
+#define fread_abi  mfread_abi
+#define fwrite_abi mfwrite_abi
+#define fread_alf  mfread_alf
+#define fwrite_alf mfwrite_alf
+#define fread_ctf  mfread_ctf
+#define fwrite_ctf mfwrite_ctf
+#define fread_pln  mfread_pln
+#define fwrite_pln mfwrite_pln
+#define fread_scf  mfread_scf
+#define fwrite_scf mfwrite_scf
+#define fread_ztr  mfread_ztr
+#define fwrite_ztr mfwrite_ztr
+
+#define exp_fread_info exp_mfread_info
+#define exp_print_file exp_print_mfile
+
+#define open_trace_file open_trace_mfile
+#define fread_reading mfread_reading
+#define fwrite_reading mfwrite_reading
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* _STDIO_HACK_H_ */