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Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
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.TH srf2fasta 1 "September 19" "" "Staden io_lib"

.SH "NAME"

.PP
.BR srf2fasta
\- Converts SRF files to fasta format

.SH "SYNOPSIS"
.PP
\fBsrf2fasta\fR  [\fI-C\fR] \fIsrf_archive\fR

.SH "DESCRIPTION"
.PP
\fBsrf2fasta\fR extracts sequences from an SRF archive and writes them
in fasta format to stdout.

.SH "OPTIONS"
.PP
.TP
\fB-C\fR
Masks out sequences tagged as bad quality.

.SH "EXAMPLES"
.PP
To extract only the good quality sequences from runX.srf into
runX.fasta.
.PP
.nf
    srf2fasta -C runX.srf > runX.fasta
.fi

.SH "AUTHOR"
.PP
James Bonfield, Wellcome Trust Sanger Institute