view srf2fastq/io_lib-1.12.2/tests/data/both.run/4_ILLUMINA_GA_BUSTARD_PARAMS.txt @ 0:d901c9f41a6a default tip

Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author dawe
date Tue, 07 Jun 2011 17:48:05 -0400
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<?xml version="1.0"?>
<BaseCallAnalysis>
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        <FirstCycle>38</FirstCycle>
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      </Phasing>
      <PhasingRestarts />
    </BaseCallParameters>
    <Cycles First="1" Last="74" Number="74" />
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    <RunParameters>
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      <BasecallFlag>1</BasecallFlag>
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        <LastCycle>74</LastCycle>
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      </ImagingReads>
      <Instrument>HWI-EAS130</Instrument>
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      <SelectedFolders />
      <SelectedTiles />
    </RunParameters>
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    <TileSelection>
      <Lane Index="1">
        <Sample>s</Sample>
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      </Lane>
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    </Time>
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</BaseCallAnalysis>