Mercurial > repos > dazeone > clonalframeml
comparison clonalframeml.xml @ 2:82c19be1a08d draft
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author | dazeone |
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date | Fri, 05 Mar 2021 14:38:48 +0000 |
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1:a6a26693f86c | 2:82c19be1a08d |
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1 <tool id="clonalframeMLtool" name="clonalframeML" version="1.0"> | |
2 <description>a software package that performs efficient inference of recombination in bacterial genomes</description> | |
3 <requirements> | |
4 <requirement type="package" version="1.12">clonalframeml</requirement> | |
5 </requirements> | |
6 | |
7 <command>'conda activate' ClonalFrameML $input $output </command> | |
8 <inputs> | |
9 <param format="nwk" name="input" type="data" label="Genome fasta file : " multiple="false" display="checkboxes"/> | |
10 <param format="fasta" name="input1" type="data" label="Genome fasta file : " multiple="false" display="checkboxes"/> | |
11 | |
12 </inputs> | |
13 | |
14 <outputs> | |
15 <data format="txt" name="output" /> | |
16 </outputs> | |
17 | |
18 <tests> | |
19 <test> | |
20 <param name="input" value="tree_45ind_190kSNP.withST.nwk" /> | |
21 <param name="input" value="190ksnp_alignment_KP2.fa" /> | |
22 <output name="output" file="results.txt" /> | |
23 </test> | |
24 </tests> | |
25 | |
26 <help> | |
27 For full documentation, please go to the ClonalframeML wiki (https://github.com/katholt/Kleborate/wiki) | |
28 </help> | |
29 <citations> | |
30 <citation type="doi">10.1371/journal.pcbi.1004041</citation> | |
31 </citations> | |
32 </tool> | |
33 | |
34 | |
35 |