# HG changeset patch
# User dazeone
# Date 1615821393 0
# Node ID b34a8459650dd4e968342fed516bbc0bb7e74e0f
# Parent  c659b21964c9dcce7c0884450d8eeedac0a3cf75
Deleted selected files

diff -r c659b21964c9 -r b34a8459650d clonalframeml.xml
--- a/clonalframeml.xml	Mon Mar 15 15:03:45 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,37 +0,0 @@
-<tool id="clonalframeMLtool" name="clonalframeML" version="1.0">
-  <description>a software package that performs efficient inference of recombination in bacterial genomes</description>
-<requirements>
-  <requirement type="package" version="1.12">clonalframeml</requirement>
-</requirements>
-
-<command>ClonalFrameMLold $input $input1 $output ; mv $output'.ML_sequence.fasta' $output ; mv $output'.labelled_tree.newick' $output1 ; mv $output'.em.txt' $output2 </command>
-  <inputs>
-	  <param format="newick" name="input" type="data" label="Newick file : " multiple="false" display="checkboxes"/>
-	  <param format="fasta" name="input1" type="data" label="Alignement fasta file : " multiple="false" display="checkboxes"/>
-
- </inputs>
-
- <outputs>
-	 <data format="fasta" name="output" label="reduced Fasta Alignment" />
-	 <data format="newick" name="output1" label="labelled newick tree" />
-	 <data format="tabular" name="output2" label="em.txt" />
- </outputs>
-
- <tests>
-    <test>
-            <param name="input" value="tree_45ind_190kSNP.withST.nwk" />
-            <param name="input" value="190ksnp_alignment_KP2.fa" />
-        <output name="output" file="results.txt" />
-    </test>
-</tests>
-
-  <help>
-For full documentation, please go to the ClonalframeML wiki (https://github.com/katholt/Kleborate/wiki)
-  </help>
-  <citations>
-         <citation type="doi">10.1371/journal.pcbi.1004041</citation>
-                </citations>
-</tool>
-
-
-