diff grapetree.xml @ 0:92badd7031c1 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/grapetree.xml	Tue Mar 22 14:34:16 2022 +0000
@@ -0,0 +1,36 @@
+<tool id="grapetreetool" name="grapetree" version="1.0">
+  <description>visualization of core genomic relationships among 100,000 bacterial pathogens.</description>
+<requirements>
+  <requirement type="package" version="2.1">grapetree</requirement>
+</requirements>
+
+ <command>grapetree '-p' $input '-m' $option-m</command>
+
+ <inputs>
+  <param format="tabular" name="input" type="data" label="Newick file : " multiple="false" display="checkboxes"/>
+  
+<param name="option-m" type="select" label="Genetic code table (Default = 1-Standard Code):">
+	<option value="NJ">Standard Code</option> 
+	<option value="MSTreeV2">MSTreeV2</option> 
+</param>
+ 
+ </inputs>
+
+<outputs>
+	<data format="newick" name="output1" label="labelled newick tree" />
+</outputs>
+
+<tests>
+    <test>
+            <param name="input" value="simuled-data.profile" />
+            <output name="output" file="output1.nwk" />
+    </test>
+</tests>
+
+<help>
+For full documentation, please go to the GrapeTree wiki (https://github.com/achtman-lab/GrapeTree)
+</help>
+<citations>
+	<citation type="doi">10.1101/gr.232397.117</citation>
+</citations>
+</tool>