Mercurial > repos > dazeone > grapetree
changeset 0:92badd7031c1 draft
Uploaded
| author | dazeone |
|---|---|
| date | Tue, 22 Mar 2022 14:34:16 +0000 |
| parents | |
| children | 07e1cfce973d |
| files | grapetree.xml |
| diffstat | 1 files changed, 36 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/grapetree.xml Tue Mar 22 14:34:16 2022 +0000 @@ -0,0 +1,36 @@ +<tool id="grapetreetool" name="grapetree" version="1.0"> + <description>visualization of core genomic relationships among 100,000 bacterial pathogens.</description> +<requirements> + <requirement type="package" version="2.1">grapetree</requirement> +</requirements> + + <command>grapetree '-p' $input '-m' $option-m</command> + + <inputs> + <param format="tabular" name="input" type="data" label="Newick file : " multiple="false" display="checkboxes"/> + +<param name="option-m" type="select" label="Genetic code table (Default = 1-Standard Code):"> + <option value="NJ">Standard Code</option> + <option value="MSTreeV2">MSTreeV2</option> +</param> + + </inputs> + +<outputs> + <data format="newick" name="output1" label="labelled newick tree" /> +</outputs> + +<tests> + <test> + <param name="input" value="simuled-data.profile" /> + <output name="output" file="output1.nwk" /> + </test> +</tests> + +<help> +For full documentation, please go to the GrapeTree wiki (https://github.com/achtman-lab/GrapeTree) +</help> +<citations> + <citation type="doi">10.1101/gr.232397.117</citation> +</citations> +</tool>