Mercurial > repos > dazeone > split_multi_fasta
comparison split_multi_fasta.xml @ 2:7de54831b070 draft default tip
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| author | dazeone |
|---|---|
| date | Wed, 21 Sep 2022 18:55:10 +0000 |
| parents | e5c928efa07a |
| children |
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| 1:e5c928efa07a | 2:7de54831b070 |
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| 8 <command detect_errors="aggressive"><![CDATA[ | 8 <command detect_errors="aggressive"><![CDATA[ |
| 9 awk -F "|" '/^>/ {close(F); ID=$1; gsub("^>", "", ID); F=ID".fasta"} {print >> F}' $input_files | 9 awk -F "|" '/^>/ {close(F); ID=$1; gsub("^>", "", ID); F=ID".fasta"} {print >> F}' $input_files |
| 10 ]]></command> | 10 ]]></command> |
| 11 | 11 |
| 12 <inputs> | 12 <inputs> |
| 13 <param format="fasta" name="input_files" type="data" label="Multi fasta file : " multiple="true" display="checkboxes"/> | 13 <param format="fasta" name="input_files" type="data" label="Multi fasta file : " multiple="false" display="checkboxes"/> |
| 14 </inputs> | 14 </inputs> |
| 15 | 15 |
| 16 <outputs> | 16 <outputs> |
| 17 <collection name="outputfasta" type="list" label="${tool.name}: FASTA files"> | 17 <collection name="outputfasta" type="list" label="${tool.name}: FASTA files"> |
| 18 <discover_datasets pattern="(?P<name>.+)\.fasta$" directory="./" format="fasta"/> | 18 <discover_datasets pattern="(?P<name>.+)\.fasta$" directory="./" format="fasta"/> |