Mercurial > repos > dcorreia > newick_display
diff nwdisplay.xml @ 1:3200899efad9 draft default tip
Uploaded
author | dcorreia |
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date | Tue, 12 Dec 2017 12:02:31 -0500 |
parents | 5c11638687d0 |
children |
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--- a/nwdisplay.xml Tue Mar 15 10:53:34 2016 -0400 +++ b/nwdisplay.xml Tue Dec 12 12:02:31 2017 -0500 @@ -1,7 +1,11 @@ -<tool id="nwdisplay" name="Newick Display" version="1"> +<tool id="nwdisplay" name="Newick Display" version="1.6"> <description>Display a phylogenetic tree as SVG</description> + <edam_operations> + <edam_operation>operation_0567</edam_operation> + </edam_operations> <requirements> <requirement type="package" version="1.6">newick_utilities</requirement> + <requirement type="package" version="1.6">newick_utils</requirement> </requirements> <command> nw_display @@ -26,7 +30,7 @@ "visibility:hidden;" #end if - -l "font-family:$leafPolice;font-size:$leafSize;" + -l "font-family:$leafFont;font-size:$leafSize;" -d "stroke:grey;fill:none;stroke-width:2;stoke-linecap:round;" -w $width $radial @@ -38,7 +42,7 @@ <param name="fileNewick" format="txt,nw,nwk,nhx" type="data" label="Newick file" /> <param name="scalebar" type="boolean" truevalue="" falsevalue="-S" checked="True" label="Display scale bar" /> <param name="legend" type="text" value="" label="Unit name scale" /> - <param name="leafPolice" type="text" value="sans-serif" label="Leaf police" /> + <param name="leafFont" type="text" value="sans-serif" label="Leaf font" /> <param name="leafSize" type="text" value="10px" label="Leaf font-size" /> <conditional name="condbranchsupport"> <param name="branchsupport" type="select" label="Branch support"> @@ -46,7 +50,7 @@ <option value="false" selected="true">Hide branch support</option> </param> <when value="true"> - <param name="supcolor" type="text" value="red" label="color" /> + <param name="supcolor" type="color" value="red" label="color" /> <param name="supfontsize" type="text" value="10px" label="font-size" /> <param name="suptransform" type="text" value="translateY(1.5em)" label="move" /> </when> @@ -58,7 +62,7 @@ <option value="false" selected="true">Hide branch length</option> </param> <when value="true"> - <param name="lencolor" type="text" value="blue" label="color" /> + <param name="lencolor" type="color" value="blue" label="color" /> <param name="lenfontsize" type="text" value="10px" label="font-size" /> <param name="lentransform" type="text" value="translate(-1.5em,0em)" label="move" /> </when> @@ -74,7 +78,7 @@ <test> <param name="fileNewick" value="tree.nwk"/> <param name="width" value="400"/> - <param name="leafPolice" value="courier"/> + <param name="leafFont" value="courier"/> <output name="output" file="tree.svg" lines_diff="2"/> </test> <test>