Mercurial > repos > dcouvin > pmlst_v2

diff pmlst/tmp_pMLST/tmp/out_inchi2.xml @ 0:cfab64885f66 draft default tip

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author dcouvin
date Mon, 06 Sep 2021 18:27:45 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pmlst/tmp_pMLST/tmp/out_inchi2.xml	Mon Sep 06 18:27:45 2021 +0000
@@ -0,0 +1,44 @@
+<?xml version="1.0"?>
+<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
+<BlastOutput>
+  <BlastOutput_program>blastn</BlastOutput_program>
+  <BlastOutput_version>BLASTN 2.11.0+</BlastOutput_version>
+  <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), &quot;A greedy algorithm for aligning DNA sequences&quot;, J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference>
+  <BlastOutput_db></BlastOutput_db>
+  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
+  <BlastOutput_query-def>pSFO157</BlastOutput_query-def>
+  <BlastOutput_query-len>121239</BlastOutput_query-len>
+  <BlastOutput_param>
+    <Parameters>
+      <Parameters_expect>10</Parameters_expect>
+      <Parameters_sc-match>1</Parameters_sc-match>
+      <Parameters_sc-mismatch>-2</Parameters_sc-mismatch>
+      <Parameters_gap-open>0</Parameters_gap-open>
+      <Parameters_gap-extend>0</Parameters_gap-extend>
+      <Parameters_filter>m;</Parameters_filter>
+    </Parameters>
+  </BlastOutput_param>
+<BlastOutput_iterations>
+<Iteration>
+  <Iteration_iter-num>1</Iteration_iter-num>
+  <Iteration_query-ID>Query_1</Iteration_query-ID>
+  <Iteration_query-def>pSFO157</Iteration_query-def>
+  <Iteration_query-len>121239</Iteration_query-len>
+<Iteration_hits>
+</Iteration_hits>
+  <Iteration_stat>
+    <Statistics>
+      <Statistics_db-num>0</Statistics_db-num>
+      <Statistics_db-len>0</Statistics_db-len>
+      <Statistics_hsp-len>20</Statistics_hsp-len>
+      <Statistics_eff-space>701858010</Statistics_eff-space>
+      <Statistics_kappa>0.46</Statistics_kappa>
+      <Statistics_lambda>1.28</Statistics_lambda>
+      <Statistics_entropy>0.85</Statistics_entropy>
+    </Statistics>
+  </Iteration_stat>
+  <Iteration_message>No hits found</Iteration_message>
+</Iteration>
+</BlastOutput_iterations>
+</BlastOutput>
+