Mercurial > repos > dcouvin > resfinder4
view resfinder/db_resfinder/phenotype_panels.txt @ 0:55051a9bc58d draft default tip
Uploaded
author | dcouvin |
---|---|
date | Mon, 10 Jan 2022 20:06:07 +0000 |
parents | |
children |
line wrap: on
line source
# # List of in-silico panels used in ResFinder # # Create new panels by adding ":Panel: <name of panel>" on a new line. # <name of panel> should be replaced by the actual name of the panel you want # to add. # IMPORTANT: Panel names must be unique. # If an entire panel can be included in a panel the panel should be included # using the text ":Include: <panel name>", where "<panel name>" is identical # to another panel name. It encouraged to include other panels if possible. # NOTE: If a panel is changed, the change will automatically take effect in # any panel that includes the panel. # Style notes: # * One empty line between each panel. # * The Panel names should be listed alphabetically (A to Z) # * :Inlclude: should imidiatly follow the :Panel: line or another :Include: # * The list of antibiotics should be listed alphabetically (A to Z) :Panel: Campylobacter Ampicillin :Panel: Campylobacter jejuni :Include: Campylobacter Ciprofloxacin Erythromycin Gentamicin Nalidixic acid Streptomycin Tetracycline :Panel: Campylobacter coli :Include: Campylobacter Ciprofloxacin Erythromycin Gentamicin Streptomycin Tetracycline :Panel: Escherichia coli Amikacin Ampicillin Ampicillin+Clavulanic acid Azithromycin Cefepime Cefotaxime Cefoxitin Ceftazidime Chloramphenicol Ciprofloxacin Colistin Ertapenem Fosfomycin Gentamicin Imipenem Meropenem Nalidixic acid Piperacillin+Tazobactam Sulfamethoxazole Temocillin Tetracycline Tigecycline Tobramycin Trimethoprim :Panel: Enterococcus faecalis Chloramphenicol Ciprofloxacin Erythromycin Fosfomycin Gentamicin Linezolid Teicoplanin Tetracycline Tigecycline Vancomycin :Panel: Enterococcus faecium Ampicillin Chloramphenicol Ciprofloxacin Erythromycin Fosfomycin Gentamicin Linezolid Quinupristin+dalfopristin Teicoplanin Tetracycline Tigecycline Vancomycin :Panel: Salmonella Amikacin Ampicillin Ampicillin+clavulanic acid Azithromycin Cefepime Cefotaxime Cefoxitin Ceftazidime Chloramphenicol Ciprofloxacin Colistin Ertapenem Gentamicin Imipenem Meropenem Nalidixic acid Pipercallin+Tazobactam Sulfamethoxazole Temocillin Tetracycline Tigecycline Tobramycin Trimethoprim :Panel: Salmonella enterica :Include: Salmonella :Panel: Staphylococcus aureus Amikacin Cefoxitin Chloramphenicol Ciprofloxacin Clindamycin Erythromycin Fosfomycin Fusidic acid Gentamicin Linezolid Mupirocin Penicillin Quinupristin+Dalfopristin Spiramycin Sulfamethoxazole Teicoplanin Telithromycin Tetracycline Tiamulin Tobramycin Trimethoprim Vancomycin :Panel: Mycobacterium tuberculosis Amikacin Bedaquiline Ethambutol Isoniazid Levofloxacin Linezolid Rifampicin Streptomycin