Mercurial > repos > dereeper > blup_calculator

changeset 1:c1c85170db1b draft default tip

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Uploaded
author dereeper
date Sun, 30 Dec 2018 01:39:11 -0500
parents 45d215f2be74
children
files blupcal.xml
diffstat 1 files changed, 23 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/blupcal.xml	Sat Dec 29 18:44:05 2018 -0500
+++ b/blupcal.xml	Sun Dec 30 01:39:11 2018 -0500
@@ -3,6 +3,7 @@
   <requirements>
   <requirement type="package" version="1.1_18_1">r-lme4</requirement> 
   <requirement type="package" version="1.20.2">r-getopt</requirement>
+  <requirement type="package" version="1.10_1">r-arm</requirement>
   </requirements> 
   <command interpreter="bash">
 ./blupcal.sh $__tool_directory__ $galaxy_tabular_file $galaxy_replication_vector_column_index $galaxy_genotype_vector_column_index $galaxy_first_y_vector_column_index $galaxy_last_y_vector_column_index $galaxy_design_conditional.galaxy_design 
@@ -139,6 +140,25 @@
   </test>
   </tests>
   <help>
+
+.. class:: infomark 
+
+**BLUP/BLUE calculator, based on lme4 R package version 1.1_18_1**
+
+.. class:: infomark 
+
+**Galaxy integration** Provided by EiB platform and GOBii and Angel Villahoz-Baleta (Cornell Univ)
+
+.. class:: infomark
+
+**Integration contributors**  Juan David Arbelaez Velez (IRRI), Dereeper Alexis, Juan Burgueno (CIMMYT)
+
+.. class:: infomark 
+
+**Support** For any questions about this tool, please send an e-mail to u.rosyara@cgiar.org
+
+
+
 **What it does**
 
 This function calculates BLUP, BLUE and means for Y variable based on the model specified by the user.
@@ -176,10 +196,8 @@
 - Variable 1, Genotype : Variable 1  are treated as random both BLUP and BLUE calculations.
 - Variable 2, Genotype : Variable 2, Variable 1 : Variable 2, Genotype : Variable 1 : Variable 2  are treated as random effects for both BLUP and BLUE calculations.
 
-
-**Citation**
-Douglas Bates, Martin Maechler, Ben Bolker, Steve Walker (2015). Fitting Linear Mixed-Effects Models Using lme4. Journal of Statistical Software, 67(1), 1-48.
-
-**Author(s)**
   </help>
+  <citations>
+         <citation type="doi">10.18637/jss.v067.i01</citation> 
+  </citations> 
 </tool>