Mercurial > repos > dereeper > cytoscape
annotate Cytoscape.sh @ 0:e3beb33f88f0 draft
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author | dereeper |
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date | Tue, 14 Aug 2018 08:02:10 -0400 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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1 #!/bin/bash |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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2 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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3 tool_path=$(dirname $0) |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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4 |
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5 filein=$1 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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6 cytoscape_html=$2 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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7 logfile=$3 |
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8 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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9 perl $tool_path/Cytoscape.pl --input $filein --html $cytoscape_html >>$logfile 2>&1 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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10 |
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13 |