Mercurial > repos > dereeper > cytoscape
annotate Cytoscape.sh @ 1:0e43c52e2449 draft default tip
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author | dereeper |
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date | Wed, 09 Jun 2021 18:17:44 +0000 |
parents | e3beb33f88f0 |
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e3beb33f88f0
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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1 #!/bin/bash |
e3beb33f88f0
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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2 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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3 tool_path=$(dirname $0) |
e3beb33f88f0
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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4 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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5 filein=$1 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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6 cytoscape_html=$2 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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7 logfile=$3 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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8 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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9 perl $tool_path/Cytoscape.pl --input $filein --html $cytoscape_html >>$logfile 2>&1 |
e3beb33f88f0
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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10 |
e3beb33f88f0
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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11 |
e3beb33f88f0
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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13 |