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3
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1 #########################################################
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2 # Complete one of the following input data
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3 # Remove the other lines if not needed
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4 #########################################################
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5
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6 # Genbank accessions of assembly accession (GCA, GCF)
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7 ids:
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8 - GCA_001042775.1
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9 - GCA_001021915.1
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10 - GCA_022406815.1
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11
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12 # Path of genbank files
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13 input_genbanks:
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14 - data/GCA_001518895.1.gb
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15 - data/GCA_001746615.1.gb
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16 - data/GCA_003382895.1.gb
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17
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18 # Input genomes as fasta and annotation files in GFF format
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19 # Only applied when using Orthofinder or PGGB workflows, starting from fasta and GFF
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20 # To be used preferentially for eukaryotes
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21 input_genomes:
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22 "MSU7":
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23 "fasta": "/share/banks/Oryza/sativa/japonica/MSU7/all.con"
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24 "gff3": "/share/banks/Oryza/sativa/japonica/MSU7/all.gff3"
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25 "name": "MSU7"
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26 "kitaake":
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27 "fasta": "/share/banks/Oryza/sativa/japonica/kitaake/Oryza_sativa_japonica_Kitaake.assembly.fna"
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28 "gff3": "/share/banks/Oryza/sativa/japonica/kitaake/Oryza_sativa_japonica_Kitaake.gff3"
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29 "name": "kitaake"
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30 "nivara":
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31 "fasta": "/share/banks/Oryza/nivara/Oryza_nivara.assembly.fna"
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32 "gff3": "/share/banks/Oryza/nivara/Oryza_nivara.gff3"
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33 "name": "nivara"
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