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3
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1 karyotype = KARYOTYPE_PATH
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2
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3 <ideogram>
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4
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5 <spacing>
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6 # spacing between ideograms
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7 default = 0.005r
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8 </spacing>
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9
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10 # ideogram position, thickness and fill
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11 radius = 0.90r
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12 thickness = 10p
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13 fill = yes
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14
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15 #stroke_thickness = 1
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16 #stroke_color = black
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17
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18 # ideogram labels
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19 # <<include ideogram.label.conf>>
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20
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21 # ideogram cytogenetic bands, if defined in the karyotype file
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22 # <<include bands.conf>>
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23
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24
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25 </ideogram>
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26
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27 <plots>
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28
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29 </plots>
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30
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31 <highlights>
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32
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33 HIGHLIGHT_BLOCK
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34
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35 </highlights>
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36
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37 <image>
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38 dir = .
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39 file = OUTPUT_PNG
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40 24bit = yes
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41 #png = yes
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42 #svg = yes
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43 # radius of inscribed circle in image
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44 radius = 1500p
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45 background = white
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46 # by default angle=0 is at 3 o'clock position
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47 angle_offset = -90
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48 #angle_orientation = counterclockwise
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49
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50 auto_alpha_colors = yes
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51 auto_alpha_steps = 5
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52 </image>
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53
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54
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55 <colors>
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56 <<include etc/colors.conf>>
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57 </colors>
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58
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59 <fonts>
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60 <<include etc/fonts.conf>>
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61 </fonts>
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62
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63 ##<<include ideogram.conf>>
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64 #<<include ticks.conf>>
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65
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66 <ticks>
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67 tick_label_font = light
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68 radius = dims(ideogram,radius_outer)
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69 label_offset = 5p
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70 label_size = 26p
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71 multiplier = 1e-6
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72 color = black
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73 thickness = 1p
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74
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75
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76 <tick>
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77 spacing = 0.1u
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78 size = 16p
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79 show_label = yes
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80 format = %.2f
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81 </tick>
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82
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83 <tick>
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84 spacing = 0.01u
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85 size = 12p
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86 </tick>
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87
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88 </ticks>
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89
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90
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91 chromosomes_units = 1000000
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92 show_ticks = yes
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93 show_tick_labels = yes
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94 chromosomes_display_default=yes
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95
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96 anglestep = 0.5
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97 minslicestep = 10
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98 beziersamples = 40
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99 debug = no
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100 warnings = no
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101 imagemap = no
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102
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103 units_ok = bupr
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104 units_nounit = n
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105
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106
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107 #debug_group = ticks
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