annotate COG/bac-genomics-scripts/ecoli_mlst/publicSTs.txt @ 13:152d7c43478b draft default tip

Uploaded
author dereeper
date Thu, 30 May 2024 20:07:55 +0000
parents e42d30da7a74
children
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1 ST ST_COMPLEX ANCESTRAL_GROUP ADKNUM FUMCNUM GYRBNUM ICDNUM MDHNUM PURANUM RECANUM SOURCE REFSTRAIN
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2 1 None D 4 2 2 4 4 4 4 H. Karch 055/89
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3 2 None D 5 3 2 6 5 5 4 H. Karch 107-11
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4 3 ST20 Cplx B1 6 4 3 7 7 7 6 H. Karch 11-1/87
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5 4 ST10 Cplx A 6 5 4 8 8 8 2 H. Karch 117/86
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6 5 ST13 Cplx AxB1 7 6 5 9 9 8 2 H. Karch 1188/00
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7 6 None AxB1 8 7 1 1 10 8 6 H. Karch 12860
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8 7 None AxB1 9 8 5 1 11 8 7 H. Karch 147/1
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9 8 ST165 Cplx A 10 9 5 10 12 9 2 H. Karch O149
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10 9 ST20 Cplx B1 6 4 3 7 7 7 8 H. Karch 165/87
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11 10 ST10 Cplx A 10 11 4 8 8 8 2 H. Karch 17-2
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12 11 ST11 Cplx ABD 12 12 8 12 15 2 2 H. Karch 1995/96
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13 12 ST12 Cplx B2 13 13 9 13 16 10 9 H. Karch 20025
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14 13 ST13 Cplx AxB1 6 6 5 9 9 8 2 H. Karch 2030/00
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15 14 ST14 Cplx B2 14 14 10 14 17 7 10 H. Karch 21084
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16 15 None B2 15 15 11 15 18 11 11 H. Karch 2348/69
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17 16 ST29 Cplx B1 6 4 12 16 9 7 12 H. Karch 2516/00
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18 17 ST20 Cplx B1 6 4 3 17 7 7 6 H. Karch 2576/97
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19 18 ST14 Cplx B2 14 14 10 14 19 7 10 H. Karch 2702
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20 19 None ABD 15 16 10 15 18 12 11 H. Karch 2715
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21 20 ST20 Cplx B1 6 4 3 18 7 7 6 H. Karch 284/97
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22 21 ST29 Cplx B1 16 4 12 16 9 7 7 H. Karch 30-2
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23 22 ST280 Cplx ABD 6 17 7 19 1 2 2 H. Karch 309-36/85
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24 23 ST23 Cplx B1 6 4 12 1 20 13 7 H. Karch 3096/00
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25 24 None B2 17 18 13 20 18 14 13 H. Karch 312/00
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26 25 None B1 6 6 14 21 9 7 7 H. Karch 3171/00
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27 26 None B1 6 19 15 18 11 8 14 H. Karch 3199/98
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28 27 ST29 Cplx B1 16 20 12 16 9 7 7 H. Karch 3319/99
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29 28 ST28 Cplx ABD 13 21 13 22 17 14 15 H. Karch 385/00
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30 29 ST29 Cplx B1 6 4 12 16 9 7 7 H. Karch 3866/00
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31 30 None D 18 22 16 23 5 15 4 H. Karch 4140-86
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32 31 ST31 Cplx D 18 22 17 6 5 5 4 H. Karch 4356/96
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33 32 ST32 Cplx ABD 19 23 18 24 21 2 16 H. Karch 4672/99
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34 33 None AxB1 6 4 4 1 22 8 7 H. Karch 4797/97
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35 34 ST10 Cplx A 10 11 4 1 8 8 2 H. Karch 5025/94
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36 35 None B2 20 24 19 13 23 16 17 H. Karch 540/00
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37 37 None D 21 22 20 6 5 17 18 H. Karch 78-5
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38 38 ST38 Cplx D 4 26 2 25 5 5 19 D. Gordon B025
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39 39 None AxB1 22 4 21 10 24 18 7 D. Gordon B030
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40 40 ST40 Cplx B1 6 4 5 26 20 8 14 H. Karch DEF53
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41 41 ST226 Cplx A 10 27 5 8 25 7 2 H. Karch DN 523/00
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42 42 None ABD 23 28 22 27 5 16 4 H. Karch E57
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43 43 ST10 Cplx A 24 11 4 8 8 8 2 H. Ochman Ecor10
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44 44 ST10 Cplx A 10 11 4 8 8 8 7 H. Ochman Ecor13
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45 45 None AxB1 6 7 23 1 8 8 2 H. Ochman Ecor15
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46 46 ST46 Cplx A 8 7 1 8 8 8 6 H. Ochman Ecor16
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47 47 None AxB1 8 11 5 1 7 18 6 H. Ochman Ecor17
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48 48 ST10 Cplx A 6 11 4 8 8 8 2 H. Ochman Ecor18
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49 49 ST10 Cplx A 25 11 4 8 8 8 2 H. Ochman Ecor2
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50 50 None A 26 7 4 1 8 8 6 H. Ochman Ecor22
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51 51 None ABD 6 4 1 13 17 8 20 H. Ochman Ecor23
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52 52 None AxB1 6 11 5 1 20 8 2 H. Ochman Ecor24
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53 53 None AxB1 9 29 12 1 11 13 6 H. Ochman Ecor26
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54 54 None AxB1 6 30 5 1 24 8 21 H. Ochman Ecor28
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55 55 ST155 Cplx B1 6 4 4 18 20 8 14 H. Ochman Ecor29
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56 56 ST155 Cplx B1 6 4 4 18 24 5 14 H. Ochman Ecor30
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57 57 ST350 Cplx AxB1 6 31 5 28 1 1 2 H. Ochman Ecor31
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58 58 ST155 Cplx AxB1 6 4 4 16 24 8 14 H. Ochman Ecor34
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59 59 ST59 Cplx ABD 27 32 24 29 26 19 22 H. Ochman Ecor35
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60 60 None ABD 28 33 24 29 26 20 2 H. Ochman Ecor36
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61 61 ST11 Cplx D 29 12 8 12 15 2 23 H. Ochman Ecor37
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62 62 None ABD 28 33 25 29 7 11 24 H. Ochman Ecor38
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63 63 None A 30 11 5 8 7 21 2 H. Ochman Ecor4
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64 64 None ABD 31 34 26 30 27 22 17 H. Ochman Ecor42
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65 65 None ABD 28 33 25 29 1 11 2 H. Ochman Ecor43
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66 66 None D 6 22 20 6 5 5 2 H. Ochman Ecor44
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67 67 None AxB1 6 19 5 1 9 8 7 H. Ochman Ecor45
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68 68 None D 33 26 2 31 5 16 19 H. Ochman Ecor46
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69 69 ST69 Cplx D 21 35 27 6 5 5 4 H. Ochman Ecor47
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70 70 None D 34 36 28 25 28 16 4 H. Ochman Ecor48
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71 71 None D 34 37 28 25 4 16 4 H. Ochman Ecor49
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72 72 ST405 Cplx D 35 37 29 25 4 5 18 H. Ochman Ecor50
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73 73 ST73 Cplx B2 36 24 9 13 17 11 25 H. Ochman Ecor51
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74 74 ST73 Cplx B2 36 24 9 13 17 5 25 H. Ochman Ecor55
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75 75 None AxB1 6 6 5 10 20 23 6 H. Ochman Ecor58
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76 76 None B2 13 13 9 13 17 10 26 H. Ochman Ecor59
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77 77 ST206 Cplx AxB1 6 7 5 1 8 18 27 H. Ochman Ecor6
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78 78 None B2 37 38 19 32 17 24 26 H. Ochman Ecor61
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79 79 None B2 37 38 19 32 17 7 26 H. Ochman Ecor62
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80 80 ST568 Cplx B2 13 24 19 14 23 1 10 H. Ochman Ecor63
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81 81 ST14 Cplx B2 14 14 10 14 17 7 21 H. Ochman Ecor64
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82 82 None B2 38 39 30 13 29 25 28 H. Ochman Ecor65
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83 83 None B2 13 38 19 13 30 25 29 H. Ochman Ecor66
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84 84 None AxB1 6 29 31 16 24 8 2 H. Ochman Ecor67
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85 85 None B1 6 6 32 26 11 26 7 H. Ochman Ecor68
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86 86 ST86 Cplx AxB1 9 6 33 33 24 8 7 H. Ochman Ecor69
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87 87 None AxB1 6 11 14 8 20 8 2 H. Ochman Ecor7
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88 88 ST23 Cplx B1 6 4 12 1 20 12 7 H. Ochman Ecor70
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89 89 None B1 39 7 4 34 20 7 7 H. Ochman Ecor72
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90 90 ST23 Cplx AxB1 6 4 12 1 20 8 7 H. Karch G1253
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91 91 None B2 13 40 34 13 23 28 30 J. Hacker F54
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92 92 None B2 40 14 19 36 23 11 10 J. Hacker 536
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93 93 ST168 Cplx A 6 11 4 10 7 8 6 J. Hacker E. coli B
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94 94 ST448 Cplx AxB1 41 6 5 16 11 8 7 H. Karch H164/82
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95 95 ST95 Cplx B2 37 38 19 37 17 11 26 J. Hacker A54
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96 96 None A 10 11 5 38 7 8 2 H. Karch H297/87
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97 97 ST29 Cplx B1 42 4 12 16 9 7 12 J. Hacker 1639/77
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98 98 ST10 Cplx A 10 11 4 39 8 8 2 GenBank MG1655
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99 99 None B1 6 4 22 18 9 26 7 D. Gordon R171
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100 100 ST165 Cplx A 10 27 5 10 12 9 2 H. Karch R284/97
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parents:
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101 101 ST101 Cplx B1 43 41 15 18 11 7 6 D. Gordon R033
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102 102 None 44 42 35 40 32 29 31 GenBank S. typhi
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103 103 None 45 4 36 10 24 18 32 D. Gordon TA109
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104 104 ST73 Cplx B2 13 24 9 13 17 11 25 D. Gordon TA014
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105 105 None B2 13 43 19 36 17 10 10 D. Gordon TA201
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106 106 ST69 Cplx D 21 35 27 6 5 8 4 D. Gordon TA024
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107 107 ST28 Cplx ABD 13 21 19 22 17 14 15 D. Gordon TA252
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108 108 None D 46 36 37 25 5 16 33 D. Gordon TA349
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109 109 None B1 6 6 1 16 9 13 2 D. Gordon TA361
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110 110 None B2 47 40 19 13 17 25 30 D. Gordon TA422
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111 111 None AxB1 6 29 14 16 24 8 2 D. Gordon TA083
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112 112 None B2 13 44 9 22 16 30 34 D. Gordon TA092
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113 113 ST29 Cplx B1 16 4 38 16 9 7 7 L. Wieler 413/89-1
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114 114 None D 4 2 2 41 4 4 4 L. Wieler F107/86
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115 115 None D 4 26 39 25 5 31 19 L. Wieler K416/97-2
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116 116 None ABD 8 11 40 42 7 18 6 L. Wieler 6/129
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117 117 None ABD 20 45 41 43 5 32 2 L. Wieler K1011/98
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118 118 None ABD 31 4 42 44 15 33 17 L. Wieler K1015/98
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119 119 None AxB1 48 46 43 45 11 34 35 L. Wieler WH02/24/007
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120 120 None B1 49 4 44 9 11 35 7 L. Wieler PS37
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121 121 ST28 Cplx ABD 13 21 13 22 17 36 15 L. Wieler Z40-94
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122 122 ST122 Cplx B2 15 24 10 46 33 37 36 L. Wieler Z311-94
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123 123 None B2 50 47 19 37 17 30 2 L. Wieler Z412-94
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124 124 None B1 6 19 3 18 9 38 6 L. Wieler Z178/1/99
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125 125 None 51 48 45 47 34 39 37 L. Wieler Z205
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126 126 None B2 13 43 19 37 17 25 25 L. Wieler G725/1/99
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127 127 None B2 13 14 19 36 23 11 10 L. Wieler RL321/96
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128 128 None D 52 49 46 48 35 40 38 L. Wieler B124/4
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129 129 None B1 6 23 3 26 9 7 7 L. Wieler AS 3934
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130 130 ST31 Cplx D 18 22 20 6 5 5 4 L. Wieler RL320/96
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131 131 ST131 Cplx B2 53 40 47 13 36 28 29 L. Wieler AS 3955
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132 132 None D 35 50 22 49 37 41 39 L. Wieler RL324/96
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133 133 None 51 48 48 50 34 42 37 L. Wieler RL325/96
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134 134 None B2 13 44 49 13 16 10 34 L. Wieler RL326/96
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135 135 None B2 13 39 50 13 16 37 25 L. Wieler RL327/96
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136 136 None B2 38 39 30 13 17 11 28 L. Wieler RL328/96
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137 137 ST32 Cplx ABD 19 23 51 24 21 2 16 L. Wieler IHIT0304
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138 139 None D 54 51 52 6 12 5 40 M. Achtman A198
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139 140 ST95 Cplx B2 55 38 19 37 17 11 26 M. Achtman A211
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140 141 None B2 13 52 10 14 17 25 17 M. Achtman A160
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141 142 ST95 Cplx B2 37 38 19 51 17 11 26 M. Achtman A152
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142 143 ST568 Cplx B2 13 24 19 14 38 1 10 M. Achtman A64
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143 144 None B2 13 43 9 36 30 44 25 M. Achtman A285
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144 145 ST243 Cplx B1 1 10 1 1 1 1 1 J. Hacker 01-01292
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145 146 None ABD 2 1 59 2 2 2 2 J. Hacker 00-02084
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146 147 ST147 Cplx ABD 3 59 60 3 3 3 3 J. Hacker 00-04776
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147 148 ST148 Cplx B1 1 4 1 5 1 1 5 J. Hacker 00-08376
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148 149 None ABD 6 60 60 3 6 6 3 J. Hacker 01-10761
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149 151 ST152 Cplx B1 11 62 7 1 14 7 7 J. Hacker 16169/97
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150 152 ST152 Cplx B1 11 63 7 1 14 7 7 J. Hacker 16266/97
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151 153 None B2 13 64 19 35 31 27 10 J. Hacker C9221a
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152 154 None AxB1 6 6 5 10 9 8 6 D. Gordon TA056
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153 155 ST155 Cplx B1 6 4 14 16 24 8 14 L. Wieler 3970
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154 156 ST156 Cplx AxB1 6 29 32 16 11 8 44 M. Maiden ZOx100
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155 157 None D 33 57 58 63 37 5 4 M. Maiden ZOx103
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156 158 None D 62 66 63 63 45 5 19 M. Maiden ZOx104
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157 159 None A 59 7 4 8 12 8 2 M. Maiden ZOx105
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158 160 None B1 6 6 15 16 11 26 6 M. Maiden ZOx106
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159 161 None A 64 56 4 1 8 8 6 M. Maiden ZOx108
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diff changeset
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parents:
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parents:
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parents:
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parents:
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parents:
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parents:
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