Mercurial > repos > dereeper > pangenome_explorer
comparison config.yaml @ 16:1e0698511c9f draft
Uploaded
| author | dereeper |
|---|---|
| date | Sun, 15 Dec 2024 21:30:16 +0000 |
| parents | e42d30da7a74 |
| children |
comparison
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| 15:dbde253606c5 | 16:1e0698511c9f |
|---|---|
| 7 ids: | 7 ids: |
| 8 - GCA_001042775.1 | 8 - GCA_001042775.1 |
| 9 - GCA_001021915.1 | 9 - GCA_001021915.1 |
| 10 - GCA_022406815.1 | 10 - GCA_022406815.1 |
| 11 | 11 |
| 12 # Path of genbank files | |
| 13 input_genbanks: | |
| 14 - data/GCA_001518895.1.gb | |
| 15 - data/GCA_001746615.1.gb | |
| 16 - data/GCA_003382895.1.gb | |
| 17 | |
| 18 # Input genomes as fasta and annotation files in GFF format | |
| 19 # Only applied when using Orthofinder or PGGB workflows, starting from fasta and GFF | |
| 20 # To be used preferentially for eukaryotes | |
| 21 input_genomes: | |
| 22 "MSU7": | |
| 23 "fasta": "/share/banks/Oryza/sativa/japonica/MSU7/all.con" | |
| 24 "gff3": "/share/banks/Oryza/sativa/japonica/MSU7/all.gff3" | |
| 25 "name": "MSU7" | |
| 26 "kitaake": | |
| 27 "fasta": "/share/banks/Oryza/sativa/japonica/kitaake/Oryza_sativa_japonica_Kitaake.assembly.fna" | |
| 28 "gff3": "/share/banks/Oryza/sativa/japonica/kitaake/Oryza_sativa_japonica_Kitaake.gff3" | |
| 29 "name": "kitaake" | |
| 30 "nivara": | |
| 31 "fasta": "/share/banks/Oryza/nivara/Oryza_nivara.assembly.fna" | |
| 32 "gff3": "/share/banks/Oryza/nivara/Oryza_nivara.gff3" | |
| 33 "name": "nivara" |