Mercurial > repos > dereeper > pangenome_explorer
comparison COG/bac-genomics-scripts/tbl2tab/example2.tab @ 3:e42d30da7a74 draft
Uploaded
| author | dereeper |
|---|---|
| date | Thu, 30 May 2024 11:52:25 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 2:97e4e3e818b6 | 3:e42d30da7a74 |
|---|---|
| 1 seq_id start stop primary_tag locus_tag EC_number EC_number EC_number EC_number gene inference inference note product protein_id pseudo rpt_family score spreadsheet_locus_tag position distance gene_number contig_order | |
| 2 c 191 310 misc_RNA EPE_c00010 COORDINATES:profile:Infernal:1.1 Thr_leader EPE_c00010 191 26 1 1 | |
| 3 c 336 2798 CDS EPE_c00020 1.1.1.3 2.7.2.4 thrA ab initio prediction:Prodigal:2.60 similar to AA sequence:K-12_MG1655:NP_414543.1 bifunctional aspartokinase/homoserine dehydrogenase 1 gnl|SmithUCSD|EPE_c00020 EPE_c00020 336 370 2 1 | |
| 4 c 3168 4697 rRNA EPE_c00030 rrsH COORDINATES:profile:RNAmmer:1.2 16S ribosomal RNA EPE_c00030 3168 74 3 1 | |
| 5 c 4771 4847 tRNA EPE_c00040 COORDINATES:profile:Aragorn:1.2 tRNA-Pseudo-xxx T EPE_c00040 4771 163 4 1 | |
| 6 c 7154 5010 CDS EPE_c00050 1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8 fadJ ab initio prediction:Prodigal:2.60 similar to AA sequence:K-12_MG1655:NP_416843.1 fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase gnl|SmithUCSD|EPE_c00050 EPE_c00050 5010 -86 5 1 | |
| 7 c 7068 7430 tmRNA EPE_c00060 ssrA COORDINATES:profile:Aragorn:1.2 "transfer-messenger RNA, SsrA" EPE_c00060 7068 83 6 1 | |
| 8 c 7513 8883 repeat_region CRISPR 23 7513 96 7 1 | |
| 9 c 8979 9275 CDS EPE_c00080 ab initio prediction:Prodigal:2.60 similar to AA sequence:K-12_MG1655:NP_414546.1 DUF2502 family putative periplasmic protein hypothetical protein gnl|SmithUCSD|EPE_00070 EPE_c00080 8979 -9214 8 1 | |
| 10 89p 61 369 pseudo EPE_89p00010 ydhA hypothetical protein fragment EPE_89p00010 61 -369 1 2 |