Mercurial > repos > dereeper > pangenome_explorer
comparison circos_templates/circos1.conf @ 3:e42d30da7a74 draft
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author | dereeper |
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date | Thu, 30 May 2024 11:52:25 +0000 |
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2:97e4e3e818b6 | 3:e42d30da7a74 |
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1 karyotype = KARYOTYPE_PATH | |
2 | |
3 <ideogram> | |
4 | |
5 <spacing> | |
6 # spacing between ideograms | |
7 default = 0.005r | |
8 </spacing> | |
9 | |
10 # ideogram position, thickness and fill | |
11 radius = 0.90r | |
12 thickness = 10p | |
13 fill = yes | |
14 | |
15 #stroke_thickness = 1 | |
16 #stroke_color = black | |
17 | |
18 # ideogram labels | |
19 # <<include ideogram.label.conf>> | |
20 | |
21 # ideogram cytogenetic bands, if defined in the karyotype file | |
22 # <<include bands.conf>> | |
23 | |
24 | |
25 </ideogram> | |
26 | |
27 <plots> | |
28 | |
29 </plots> | |
30 | |
31 <highlights> | |
32 | |
33 HIGHLIGHT_BLOCK | |
34 | |
35 </highlights> | |
36 | |
37 <image> | |
38 dir = . | |
39 file = OUTPUT_PNG | |
40 24bit = yes | |
41 #png = yes | |
42 #svg = yes | |
43 # radius of inscribed circle in image | |
44 radius = 1500p | |
45 background = white | |
46 # by default angle=0 is at 3 o'clock position | |
47 angle_offset = -90 | |
48 #angle_orientation = counterclockwise | |
49 | |
50 auto_alpha_colors = yes | |
51 auto_alpha_steps = 5 | |
52 </image> | |
53 | |
54 | |
55 <colors> | |
56 <<include etc/colors.conf>> | |
57 </colors> | |
58 | |
59 <fonts> | |
60 <<include etc/fonts.conf>> | |
61 </fonts> | |
62 | |
63 ##<<include ideogram.conf>> | |
64 #<<include ticks.conf>> | |
65 | |
66 <ticks> | |
67 tick_label_font = light | |
68 radius = dims(ideogram,radius_outer) | |
69 label_offset = 5p | |
70 label_size = 26p | |
71 multiplier = 1e-6 | |
72 color = black | |
73 thickness = 1p | |
74 | |
75 | |
76 <tick> | |
77 spacing = 0.1u | |
78 size = 16p | |
79 show_label = yes | |
80 format = %.2f | |
81 </tick> | |
82 | |
83 <tick> | |
84 spacing = 0.01u | |
85 size = 12p | |
86 </tick> | |
87 | |
88 </ticks> | |
89 | |
90 | |
91 chromosomes_units = 1000000 | |
92 show_ticks = yes | |
93 show_tick_labels = yes | |
94 chromosomes_display_default=yes | |
95 | |
96 anglestep = 0.5 | |
97 minslicestep = 10 | |
98 beziersamples = 40 | |
99 debug = no | |
100 warnings = no | |
101 imagemap = no | |
102 | |
103 units_ok = bupr | |
104 units_nounit = n | |
105 | |
106 | |
107 #debug_group = ticks |