Mercurial > repos > dereeper > pangenome_explorer
diff circos_templates/circos1.conf @ 3:e42d30da7a74 draft
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author | dereeper |
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date | Thu, 30 May 2024 11:52:25 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/circos_templates/circos1.conf Thu May 30 11:52:25 2024 +0000 @@ -0,0 +1,107 @@ +karyotype = KARYOTYPE_PATH + +<ideogram> + +<spacing> +# spacing between ideograms +default = 0.005r +</spacing> + +# ideogram position, thickness and fill +radius = 0.90r +thickness = 10p +fill = yes + +#stroke_thickness = 1 +#stroke_color = black + +# ideogram labels +# <<include ideogram.label.conf>> + +# ideogram cytogenetic bands, if defined in the karyotype file +# <<include bands.conf>> + + +</ideogram> + +<plots> + +</plots> + +<highlights> + +HIGHLIGHT_BLOCK + +</highlights> + +<image> +dir = . +file = OUTPUT_PNG +24bit = yes +#png = yes +#svg = yes +# radius of inscribed circle in image +radius = 1500p +background = white +# by default angle=0 is at 3 o'clock position +angle_offset = -90 +#angle_orientation = counterclockwise + +auto_alpha_colors = yes +auto_alpha_steps = 5 +</image> + + +<colors> +<<include etc/colors.conf>> +</colors> + +<fonts> +<<include etc/fonts.conf>> +</fonts> + +##<<include ideogram.conf>> +#<<include ticks.conf>> + +<ticks> +tick_label_font = light +radius = dims(ideogram,radius_outer) +label_offset = 5p +label_size = 26p +multiplier = 1e-6 +color = black +thickness = 1p + + +<tick> +spacing = 0.1u +size = 16p +show_label = yes +format = %.2f +</tick> + +<tick> +spacing = 0.01u +size = 12p +</tick> + +</ticks> + + +chromosomes_units = 1000000 +show_ticks = yes +show_tick_labels = yes +chromosomes_display_default=yes + +anglestep = 0.5 +minslicestep = 10 +beziersamples = 40 +debug = no +warnings = no +imagemap = no + +units_ok = bupr +units_nounit = n + + +#debug_group = ticks