diff circos_templates/circos1.conf @ 3:e42d30da7a74 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/circos_templates/circos1.conf	Thu May 30 11:52:25 2024 +0000
@@ -0,0 +1,107 @@
+karyotype = KARYOTYPE_PATH
+
+<ideogram>
+
+<spacing>
+# spacing between ideograms
+default = 0.005r
+</spacing>
+
+# ideogram position, thickness and fill
+radius           = 0.90r
+thickness        = 10p
+fill             = yes
+
+#stroke_thickness = 1
+#stroke_color     = black
+
+# ideogram labels
+# <<include ideogram.label.conf>>
+
+# ideogram cytogenetic bands, if defined in the karyotype file
+# <<include bands.conf>>
+
+
+</ideogram>
+
+<plots>
+
+</plots>
+
+<highlights>
+
+HIGHLIGHT_BLOCK
+
+</highlights>
+
+<image>
+dir = .
+file  = OUTPUT_PNG
+24bit = yes
+#png = yes
+#svg = yes
+# radius of inscribed circle in image
+radius         = 1500p
+background     = white
+# by default angle=0 is at 3 o'clock position
+angle_offset   = -90
+#angle_orientation = counterclockwise
+
+auto_alpha_colors = yes
+auto_alpha_steps  = 5
+</image>
+
+
+<colors>
+<<include etc/colors.conf>>
+</colors>
+
+<fonts>
+<<include etc/fonts.conf>>
+</fonts>
+
+##<<include ideogram.conf>>
+#<<include ticks.conf>>
+
+<ticks>
+tick_label_font  = light
+radius           = dims(ideogram,radius_outer)
+label_offset     = 5p
+label_size       = 26p
+multiplier       = 1e-6
+color            = black
+thickness        = 1p
+
+
+<tick>
+spacing        = 0.1u
+size           = 16p
+show_label     = yes
+format         = %.2f
+</tick>
+
+<tick>
+spacing        = 0.01u
+size           = 12p
+</tick>
+
+</ticks>
+
+
+chromosomes_units           = 1000000
+show_ticks       = yes
+show_tick_labels = yes
+chromosomes_display_default=yes
+
+anglestep       = 0.5
+minslicestep    = 10
+beziersamples   = 40
+debug           = no
+warnings        = no
+imagemap        = no
+
+units_ok = bupr
+units_nounit = n
+
+
+#debug_group = ticks