Mercurial > repos > dereeper > pangenome_explorer

diff panexplorer_sbatch.sh @ 3:e42d30da7a74 draft

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author dereeper
date Thu, 30 May 2024 11:52:25 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/panexplorer_sbatch.sh	Thu May 30 11:52:25 2024 +0000
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+#SBATCH --job-name=panexplorer
+#SBATCH --cpus-per-task=18
+#SBATCH --mem-per-cpu=20G
+#SBATCH --partition=supermem
+
+module load singularity/4.0.1
+export PANEX_PATH=$PWD
+
+singularity exec $PANEX_PATH/singularity/panexplorer.sif snakemake --cores 1 -s Snakemake_files/Snakefile_pggb_heatmap_upset