view PanExplorer_workflow/images/dag.svg @ 1:032f6b3806a3 draft

Uploaded

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<!-- Title: snakemake_dag Pages: 1 -->
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<!-- 0 -->
<g id="node1" class="node"><title>0</title>
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<!-- 1 -->
<g id="node2" class="node"><title>1</title>
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<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge"><title>1&#45;&gt;0</title>
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<!-- 2 -->
<g id="node3" class="node"><title>2</title>
<path fill="none" stroke="#56d8d0" stroke-width="2" stroke-dasharray="5,2" d="M104,-540C104,-540 12,-540 12,-540 6,-540 0,-534 0,-528 0,-528 0,-516 0,-516 0,-510 6,-504 12,-504 12,-504 104,-504 104,-504 110,-504 116,-510 116,-516 116,-516 116,-528 116,-528 116,-534 110,-540 104,-540"/>
<text text-anchor="middle" x="58" y="-525" font-family="sans" font-size="10.00">gcskew</text>
<text text-anchor="middle" x="58" y="-514" font-family="sans" font-size="10.00">sample: CP001759.1</text>
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<!-- 2&#45;&gt;1 -->
<g id="edge10" class="edge"><title>2&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M106.913,-503.966C136.587,-493.631 174.494,-480.43 205.039,-469.792"/>
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<!-- 3 -->
<g id="node4" class="node"><title>3</title>
<path fill="none" stroke="#68d856" stroke-width="2" stroke-dasharray="5,2" d="M714,-612C714,-612 684,-612 684,-612 678,-612 672,-606 672,-600 672,-600 672,-588 672,-588 672,-582 678,-576 684,-576 684,-576 714,-576 714,-576 720,-576 726,-582 726,-588 726,-588 726,-600 726,-600 726,-606 720,-612 714,-612"/>
<text text-anchor="middle" x="699" y="-591.5" font-family="sans" font-size="10.00">wget</text>
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<!-- 3&#45;&gt;2 -->
<g id="edge13" class="edge"><title>3&#45;&gt;2</title>
<path fill="none" stroke="grey" stroke-width="2" d="M671.907,-592.004C590.561,-588.696 341.303,-576.253 126.241,-540.063"/>
<polygon fill="grey" stroke="grey" points="126.796,-536.607 116.35,-538.377 125.62,-543.507 126.796,-536.607"/>
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<!-- 4 -->
<g id="node5" class="node"><title>4</title>
<path fill="none" stroke="#56d8d0" stroke-width="2" stroke-dasharray="5,2" d="M238,-540C238,-540 146,-540 146,-540 140,-540 134,-534 134,-528 134,-528 134,-516 134,-516 134,-510 140,-504 146,-504 146,-504 238,-504 238,-504 244,-504 250,-510 250,-516 250,-516 250,-528 250,-528 250,-534 244,-540 238,-540"/>
<text text-anchor="middle" x="192" y="-525" font-family="sans" font-size="10.00">gcskew</text>
<text text-anchor="middle" x="192" y="-514" font-family="sans" font-size="10.00">sample: CP023731.1</text>
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<!-- 3&#45;&gt;4 -->
<g id="edge14" class="edge"><title>3&#45;&gt;4</title>
<path fill="none" stroke="grey" stroke-width="2" d="M671.778,-590.947C603.893,-585.568 421.558,-569.528 260.115,-540.071"/>
<polygon fill="grey" stroke="grey" points="260.473,-536.578 250.004,-538.203 259.201,-543.462 260.473,-536.578"/>
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<!-- 5 -->
<g id="node6" class="node"><title>5</title>
<path fill="none" stroke="#56d8d0" stroke-width="2" stroke-dasharray="5,2" d="M372,-540C372,-540 280,-540 280,-540 274,-540 268,-534 268,-528 268,-528 268,-516 268,-516 268,-510 274,-504 280,-504 280,-504 372,-504 372,-504 378,-504 384,-510 384,-516 384,-516 384,-528 384,-528 384,-534 378,-540 372,-540"/>
<text text-anchor="middle" x="326" y="-525" font-family="sans" font-size="10.00">gcskew</text>
<text text-anchor="middle" x="326" y="-514" font-family="sans" font-size="10.00">sample: CP023730.1</text>
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<!-- 3&#45;&gt;5 -->
<g id="edge15" class="edge"><title>3&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M671.919,-588.768C619.071,-580.391 498.563,-560.708 398,-540 396.726,-539.738 395.441,-539.47 394.146,-539.197"/>
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<!-- 6 -->
<g id="node7" class="node"><title>6</title>
<path fill="none" stroke="#d89c56" stroke-width="2" stroke-dasharray="5,2" d="M608,-468C608,-468 578,-468 578,-468 572,-468 566,-462 566,-456 566,-456 566,-444 566,-444 566,-438 572,-432 578,-432 578,-432 608,-432 608,-432 614,-432 620,-438 620,-444 620,-444 620,-456 620,-456 620,-462 614,-468 608,-468"/>
<text text-anchor="middle" x="593" y="-447.5" font-family="sans" font-size="10.00">cactus</text>
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<!-- 3&#45;&gt;6 -->
<g id="edge16" class="edge"><title>3&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M671.857,-591.837C609.953,-588.556 461.335,-576.921 431,-540 392.949,-493.687 496.667,-467.577 555.532,-456.843"/>
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<!-- 7 -->
<g id="node8" class="node"><title>7</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" stroke-dasharray="5,2" d="M544,-540C544,-540 452,-540 452,-540 446,-540 440,-534 440,-528 440,-528 440,-516 440,-516 440,-510 446,-504 452,-504 452,-504 544,-504 544,-504 550,-504 556,-510 556,-516 556,-516 556,-528 556,-528 556,-534 550,-540 544,-540"/>
<text text-anchor="middle" x="498" y="-525" font-family="sans" font-size="10.00">genbank2gff3</text>
<text text-anchor="middle" x="498" y="-514" font-family="sans" font-size="10.00">sample: CP001759.1</text>
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<!-- 3&#45;&gt;7 -->
<g id="edge20" class="edge"><title>3&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M671.892,-583.559C642.454,-573.307 594.544,-556.622 556.459,-543.359"/>
<polygon fill="grey" stroke="grey" points="557.6,-540.05 547.005,-540.067 555.298,-546.661 557.6,-540.05"/>
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<!-- 8 -->
<g id="node9" class="node"><title>8</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" stroke-dasharray="5,2" d="M678,-540C678,-540 586,-540 586,-540 580,-540 574,-534 574,-528 574,-528 574,-516 574,-516 574,-510 580,-504 586,-504 586,-504 678,-504 678,-504 684,-504 690,-510 690,-516 690,-516 690,-528 690,-528 690,-534 684,-540 678,-540"/>
<text text-anchor="middle" x="632" y="-525" font-family="sans" font-size="10.00">genbank2gff3</text>
<text text-anchor="middle" x="632" y="-514" font-family="sans" font-size="10.00">sample: CP023731.1</text>
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<!-- 3&#45;&gt;8 -->
<g id="edge21" class="edge"><title>3&#45;&gt;8</title>
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<polygon fill="grey" stroke="grey" points="657.814,-544.908 648.371,-540.104 652.757,-549.749 657.814,-544.908"/>
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<!-- 9 -->
<g id="node10" class="node"><title>9</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" stroke-dasharray="5,2" d="M812,-540C812,-540 720,-540 720,-540 714,-540 708,-534 708,-528 708,-528 708,-516 708,-516 708,-510 714,-504 720,-504 720,-504 812,-504 812,-504 818,-504 824,-510 824,-516 824,-516 824,-528 824,-528 824,-534 818,-540 812,-540"/>
<text text-anchor="middle" x="766" y="-525" font-family="sans" font-size="10.00">genbank2gff3</text>
<text text-anchor="middle" x="766" y="-514" font-family="sans" font-size="10.00">sample: CP023730.1</text>
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<!-- 3&#45;&gt;9 -->
<g id="edge22" class="edge"><title>3&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M715.562,-575.697C723.675,-567.22 733.588,-556.864 742.471,-547.583"/>
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<!-- 12 -->
<g id="node13" class="node"><title>12</title>
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<text text-anchor="middle" x="770" y="-231.5" font-family="sans" font-size="10.00">bedtools_intersect</text>
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<!-- 3&#45;&gt;12 -->
<g id="edge25" class="edge"><title>3&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M726.115,-592.214C798.356,-588.54 990,-567.786 990,-451 990,-451 990,-451 990,-377 990,-301.438 897.254,-264.136 832.199,-247.265"/>
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<!-- 14 -->
<g id="node15" class="node"><title>14</title>
<path fill="none" stroke="#569ad8" stroke-width="2" stroke-dasharray="5,2" d="M816,-396C816,-396 724,-396 724,-396 718,-396 712,-390 712,-384 712,-384 712,-372 712,-372 712,-366 718,-360 724,-360 724,-360 816,-360 816,-360 822,-360 828,-366 828,-372 828,-372 828,-384 828,-384 828,-390 822,-396 816,-396"/>
<text text-anchor="middle" x="770" y="-381" font-family="sans" font-size="10.00">minigraph</text>
<text text-anchor="middle" x="770" y="-370" font-family="sans" font-size="10.00">sample: CP001759.1</text>
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<!-- 3&#45;&gt;14 -->
<g id="edge30" class="edge"><title>3&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M726.211,-592.435C761.7,-590.056 822.596,-579.985 851,-540 882.924,-495.06 832.547,-435.725 798.027,-403.091"/>
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<!-- 16 -->
<g id="node17" class="node"><title>16</title>
<path fill="none" stroke="#569ad8" stroke-width="2" stroke-dasharray="5,2" d="M950,-396C950,-396 858,-396 858,-396 852,-396 846,-390 846,-384 846,-384 846,-372 846,-372 846,-366 852,-360 858,-360 858,-360 950,-360 950,-360 956,-360 962,-366 962,-372 962,-372 962,-384 962,-384 962,-390 956,-396 950,-396"/>
<text text-anchor="middle" x="904" y="-381" font-family="sans" font-size="10.00">minigraph</text>
<text text-anchor="middle" x="904" y="-370" font-family="sans" font-size="10.00">sample: CP023731.1</text>
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<!-- 3&#45;&gt;16 -->
<g id="edge33" class="edge"><title>3&#45;&gt;16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M726.119,-592.74C764.295,-590.826 833.409,-581.415 871,-540 904.541,-503.047 907.654,-441.434 906.261,-406.107"/>
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<!-- 18 -->
<g id="node19" class="node"><title>18</title>
<path fill="none" stroke="#569ad8" stroke-width="2" stroke-dasharray="5,2" d="M682,-396C682,-396 590,-396 590,-396 584,-396 578,-390 578,-384 578,-384 578,-372 578,-372 578,-366 584,-360 590,-360 590,-360 682,-360 682,-360 688,-360 694,-366 694,-372 694,-372 694,-384 694,-384 694,-390 688,-396 682,-396"/>
<text text-anchor="middle" x="636" y="-381" font-family="sans" font-size="10.00">minigraph</text>
<text text-anchor="middle" x="636" y="-370" font-family="sans" font-size="10.00">sample: CP023730.1</text>
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<!-- 3&#45;&gt;18 -->
<g id="edge36" class="edge"><title>3&#45;&gt;18</title>
<path fill="none" stroke="grey" stroke-width="2" d="M726.111,-590.983C757.843,-587.003 809.089,-575.171 833,-540 841.996,-526.768 840.709,-518.021 833,-504 804.61,-452.364 744.869,-419.048 698.576,-399.905"/>
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<!-- 21 -->
<g id="node22" class="node"><title>21</title>
<path fill="none" stroke="#afd856" stroke-width="2" stroke-dasharray="5,2" d="M1060,-468C1060,-468 1030,-468 1030,-468 1024,-468 1018,-462 1018,-456 1018,-456 1018,-444 1018,-444 1018,-438 1024,-432 1030,-432 1030,-432 1060,-432 1060,-432 1066,-432 1072,-438 1072,-444 1072,-444 1072,-456 1072,-456 1072,-462 1066,-468 1060,-468"/>
<text text-anchor="middle" x="1045" y="-447.5" font-family="sans" font-size="10.00">fastani</text>
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<!-- 3&#45;&gt;21 -->
<g id="edge40" class="edge"><title>3&#45;&gt;21</title>
<path fill="none" stroke="grey" stroke-width="2" d="M726.261,-591.465C792.668,-587.232 960.545,-573.419 1004,-540 1023.64,-524.898 1034.2,-498.181 1039.66,-477.948"/>
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<!-- 4&#45;&gt;1 -->
<g id="edge11" class="edge"><title>4&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M208.562,-503.697C216.675,-495.22 226.588,-484.864 235.471,-475.583"/>
<polygon fill="grey" stroke="grey" points="238.243,-477.749 242.629,-468.104 233.186,-472.908 238.243,-477.749"/>
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<!-- 5&#45;&gt;1 -->
<g id="edge12" class="edge"><title>5&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M309.438,-503.697C301.325,-495.22 291.412,-484.864 282.529,-475.583"/>
<polygon fill="grey" stroke="grey" points="284.814,-472.908 275.371,-468.104 279.757,-477.749 284.814,-472.908"/>
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<!-- 6&#45;&gt;0 -->
<g id="edge2" class="edge"><title>6&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M565.999,-438.535C522.076,-419.538 440,-374.95 440,-307 440,-307 440,-307 440,-161 440,-114.733 459.638,-102.982 494,-72 515.528,-52.5894 545.424,-38.9287 568.914,-30.3427"/>
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<!-- 10 -->
<g id="node11" class="node"><title>10</title>
<path fill="none" stroke="#d87556" stroke-width="2" stroke-dasharray="5,2" d="M510,-252C510,-252 480,-252 480,-252 474,-252 468,-246 468,-240 468,-240 468,-228 468,-228 468,-222 474,-216 480,-216 480,-216 510,-216 510,-216 516,-216 522,-222 522,-228 522,-228 522,-240 522,-240 522,-246 516,-252 510,-252"/>
<text text-anchor="middle" x="495" y="-231.5" font-family="sans" font-size="10.00">odgi</text>
</g>
<!-- 6&#45;&gt;10 -->
<g id="edge23" class="edge"><title>6&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M568.838,-431.826C557.316,-422.462 544.275,-409.945 536,-396 510.764,-353.473 500.941,-295.697 497.205,-262.171"/>
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<!-- 11 -->
<g id="node12" class="node"><title>11</title>
<path fill="none" stroke="#88d856" stroke-width="2" stroke-dasharray="5,2" d="M565.25,-108C565.25,-108 534.75,-108 534.75,-108 528.75,-108 522.75,-102 522.75,-96 522.75,-96 522.75,-84 522.75,-84 522.75,-78 528.75,-72 534.75,-72 534.75,-72 565.25,-72 565.25,-72 571.25,-72 577.25,-78 577.25,-84 577.25,-84 577.25,-96 577.25,-96 577.25,-102 571.25,-108 565.25,-108"/>
<text text-anchor="middle" x="550" y="-87.5" font-family="sans" font-size="10.00">gfatools</text>
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<!-- 6&#45;&gt;11 -->
<g id="edge24" class="edge"><title>6&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M584.09,-431.582C571.495,-405.303 550,-353.623 550,-307 550,-307 550,-307 550,-233 550,-192.996 550,-146.653 550,-118.08"/>
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<!-- 6&#45;&gt;14 -->
<g id="edge31" class="edge"><title>6&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M620.268,-438.216C646.018,-428.033 685.331,-412.485 717.214,-399.876"/>
<polygon fill="grey" stroke="grey" points="718.835,-402.999 726.847,-396.066 716.26,-396.489 718.835,-402.999"/>
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<!-- 6&#45;&gt;16 -->
<g id="edge34" class="edge"><title>6&#45;&gt;16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M620.149,-443.423C663.599,-434.428 751.662,-415.916 836.173,-396.156"/>
<polygon fill="grey" stroke="grey" points="836.99,-399.559 845.925,-393.866 835.39,-392.745 836.99,-399.559"/>
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<!-- 6&#45;&gt;18 -->
<g id="edge37" class="edge"><title>6&#45;&gt;18</title>
<path fill="none" stroke="grey" stroke-width="2" d="M603.629,-431.697C608.628,-423.559 614.691,-413.689 620.212,-404.701"/>
<polygon fill="grey" stroke="grey" points="623.241,-406.457 625.493,-396.104 617.277,-402.793 623.241,-406.457"/>
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<!-- 7&#45;&gt;6 -->
<g id="edge17" class="edge"><title>7&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M521.483,-503.697C533.563,-494.796 548.454,-483.823 561.516,-474.199"/>
<polygon fill="grey" stroke="grey" points="563.813,-476.854 569.787,-468.104 559.66,-471.219 563.813,-476.854"/>
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<!-- 8&#45;&gt;6 -->
<g id="edge18" class="edge"><title>8&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M622.36,-503.697C617.873,-495.644 612.441,-485.894 607.476,-476.982"/>
<polygon fill="grey" stroke="grey" points="610.454,-475.137 602.53,-468.104 604.339,-478.544 610.454,-475.137"/>
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<!-- 9&#45;&gt;6 -->
<g id="edge19" class="edge"><title>9&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M723.679,-503.876C694.777,-492.181 656.879,-476.847 629.342,-465.705"/>
<polygon fill="grey" stroke="grey" points="630.649,-462.458 620.066,-461.952 628.023,-468.947 630.649,-462.458"/>
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<!-- 10&#45;&gt;0 -->
<g id="edge3" class="edge"><title>10&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M492.18,-215.811C487.983,-184.409 483.467,-116.873 513,-72 526.082,-52.1228 549.344,-38.8703 569.33,-30.5884"/>
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<!-- 11&#45;&gt;0 -->
<g id="edge4" class="edge"><title>11&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M563.843,-71.6966C570.489,-63.3893 578.578,-53.2771 585.887,-44.1407"/>
<polygon fill="grey" stroke="grey" points="588.803,-46.0995 592.317,-36.1043 583.336,-41.7266 588.803,-46.0995"/>
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<!-- 12&#45;&gt;0 -->
<g id="edge5" class="edge"><title>12&#45;&gt;0</title>
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<!-- 19 -->
<g id="node20" class="node"><title>19</title>
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<!-- 12&#45;&gt;19 -->
<g id="edge38" class="edge"><title>12&#45;&gt;19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M747.753,-215.697C736.418,-206.881 722.47,-196.032 710.181,-186.474"/>
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<!-- 20 -->
<g id="node21" class="node"><title>20</title>
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<!-- 12&#45;&gt;20 -->
<g id="edge39" class="edge"><title>12&#45;&gt;20</title>
<path fill="none" stroke="grey" stroke-width="2" d="M770.247,-215.697C770.357,-207.983 770.49,-198.712 770.613,-190.112"/>
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<!-- 13 -->
<g id="node14" class="node"><title>13</title>
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<!-- 13&#45;&gt;12 -->
<g id="edge26" class="edge"><title>13&#45;&gt;12</title>
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<!-- 14&#45;&gt;13 -->
<g id="edge29" class="edge"><title>14&#45;&gt;13</title>
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<!-- 15 -->
<g id="node16" class="node"><title>15</title>
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<!-- 15&#45;&gt;12 -->
<g id="edge27" class="edge"><title>15&#45;&gt;12</title>
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<!-- 16&#45;&gt;15 -->
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<path fill="none" stroke="grey" stroke-width="2" d="M896.584,-359.697C893.206,-351.813 889.13,-342.304 885.377,-333.546"/>
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<!-- 17 -->
<g id="node18" class="node"><title>17</title>
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<!-- 17&#45;&gt;12 -->
<g id="edge28" class="edge"><title>17&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M691.441,-287.876C704.787,-278.893 721.324,-267.763 735.778,-258.034"/>
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<!-- 18&#45;&gt;17 -->
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<!-- 19&#45;&gt;0 -->
<g id="edge6" class="edge"><title>19&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M692.389,-143.869C704.288,-125.124 718.607,-94.7184 705,-72 691.562,-49.5635 665.023,-36.0877 642.803,-28.3425"/>
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<!-- 22 -->
<g id="node23" class="node"><title>22</title>
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<!-- 19&#45;&gt;22 -->
<g id="edge41" class="edge"><title>19&#45;&gt;22</title>
<path fill="none" stroke="grey" stroke-width="2" d="M676.292,-143.697C674.639,-135.983 672.653,-126.712 670.81,-118.112"/>
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<!-- 20&#45;&gt;0 -->
<g id="edge7" class="edge"><title>20&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M765.311,-143.826C758.036,-124.187 743.721,-92.1563 722,-72 699.604,-51.2179 667.65,-37.441 642.947,-29.1555"/>
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<!-- 21&#45;&gt;0 -->
<g id="edge8" class="edge"><title>21&#45;&gt;0</title>
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<!-- 22&#45;&gt;0 -->
<g id="edge9" class="edge"><title>22&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M650.416,-71.6966C643.342,-63.3046 634.717,-53.0705 626.955,-43.8613"/>
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