Mercurial > repos > dereeper > pangenome_explorer
view circos_templates/circos1.conf @ 9:24676ef2945d draft
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author | dereeper |
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date | Thu, 30 May 2024 16:18:04 +0000 |
parents | e42d30da7a74 |
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karyotype = KARYOTYPE_PATH <ideogram> <spacing> # spacing between ideograms default = 0.005r </spacing> # ideogram position, thickness and fill radius = 0.90r thickness = 10p fill = yes #stroke_thickness = 1 #stroke_color = black # ideogram labels # <<include ideogram.label.conf>> # ideogram cytogenetic bands, if defined in the karyotype file # <<include bands.conf>> </ideogram> <plots> </plots> <highlights> HIGHLIGHT_BLOCK </highlights> <image> dir = . file = OUTPUT_PNG 24bit = yes #png = yes #svg = yes # radius of inscribed circle in image radius = 1500p background = white # by default angle=0 is at 3 o'clock position angle_offset = -90 #angle_orientation = counterclockwise auto_alpha_colors = yes auto_alpha_steps = 5 </image> <colors> <<include etc/colors.conf>> </colors> <fonts> <<include etc/fonts.conf>> </fonts> ##<<include ideogram.conf>> #<<include ticks.conf>> <ticks> tick_label_font = light radius = dims(ideogram,radius_outer) label_offset = 5p label_size = 26p multiplier = 1e-6 color = black thickness = 1p <tick> spacing = 0.1u size = 16p show_label = yes format = %.2f </tick> <tick> spacing = 0.01u size = 12p </tick> </ticks> chromosomes_units = 1000000 show_ticks = yes show_tick_labels = yes chromosomes_display_default=yes anglestep = 0.5 minslicestep = 10 beziersamples = 40 debug = no warnings = no imagemap = no units_ok = bupr units_nounit = n #debug_group = ticks